MD15G1259200.v1.1

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000878
Physical Location & Seq
Forward (+)
22022781 .. 22025401
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1259200.v1.1.491

Sequence Viewer

Length: 1338 bp
ATGAAAGGAGGACTGGGATCCCTGGTGAAGGGGCCTCGTGCGGTTAACGCGATCATTCAAAAGCTGCAGAGATGCATGAGCAGCGGAACCGCCGCAGTCATGAGCTTTGGCGACGGAAACCACGGTGCTCTGGGCCTGCCGACTTCCCTCATGGGACTCGGCGTCGACGCTTACGAACCCATCCGGGTCCCTTCTCTGCCTCCTGATGTCACCAGCGTCGCCGCTGGGCACTACCACTCCCTCGCTGTCACTTCCCAAGGGCAGCTCTGGGCTTGGGGCCGAGACCTTGAAGCCCAGCTCGGCCGCGGACTGCCTTCTCCCAGAGATTCATGGAATGAACCAAAGAGAGTAACTGGGTTGGATCAAGTAAACGTTTGTGCTACATTTGCGTCCGGTGTTGTTTCTGCAGCCATTGGAGATGATGGTTCTTTGTGGATTTGGGGAAAGTCGAAGCGTGGCCAGCTTGGTCTTGGAAATCAAGTCACCGGGGCCATGGTACCTTCCAGAGTTGAAGCACTATCAGGAGAGAAAATAATTAAGGTATCATTTGGTTGGGGGCATGCTCTTGCACTGAGTGAGGATGGAAAATTGTTTGGTTGGGGTTATTCAGCCGATGGTAGGTTAGGAAGCATTACAGAATCCTTGGAGCCGTCTCTACTGGAATCAAGGGCAGGTTTGAGTAATAAGGAACTATCAAGTTCAACTGTGGAAGCTGCGGAGAAGCTGGTTTTAGAAGGAATGGCTAAGGAGAATGACATGCCGATAGTTTGGGAACCTAGTTTAGTGAGAGAACTACATTCTGTTGAAGTTGTAGACATTTCATGTGGTTTTGATCATTCATTAATTCTTTGCGGTGATGGAACACTACTAAGTTGTGGGAGCAACGTATATGGTCAGTTGGGCAGAGAAAAACCGGATTTGGGATTGTTCCCTGTTGACATAAGCTTCCGTCCCACATCAATAGCATCAGGGCTTGGCCATTCTTTGGCAATTTGCCAGGTTCCATCGTCGAATGTTATAAAAGGAGCTGAAGACATTGTTACATGGGGGTGGAATCAAAGTTCTCAGCTTGGAAGAGGTGGATCGGAGAATATTCCATTGGTGGTTGAAGGGTTGGAAGGGGAAATTCCTGTCTCAGTGTCAGGAGGGCGTGTGCATTCCATTGCTCTCACATCCAAGGGAGAAGTGTGGGTTTGGGGTTGTGGTAAGAATGGAAGATTAGGGTTAGGAAGCTCCTGTGATGAAGCAGAACCGATTTTGCTCGACTCTGTAGAGGGTTGTCAAGTTTTACAAGCTGTGTCTGGATTTGATCATAATCTTGTCCTGATTGCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

446

Amino Acids

46.56

Weight (kDa)

5.1

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 33 - 440 6.1e-81 RCC1-like domain
RCC1 PF00415 35 - 83 2.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 70 - 95 1.7e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 141 - 191 1.1e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 178 - 206 1.4e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 270 - 299 3.9e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 286 - 331 1.3e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 348 - 390 1.9e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 378 - 405 1.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 393 - 442 1e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1019
Acc36I ACCTGC 1 cut(s) 662
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 496
AccB7I CCANNNNNTGG 1 cut(s) 985
AccI GTMKAC 2 cut(s) 165, 813
AccII CGCG 2 cut(s) 50, 306
AclI AACGTT 1 cut(s) 372
AclWI GGATC 4 cut(s) 12, 25, 369, 1090
AcoI YGGCCR 3 cut(s) 301, 457, 976
AcsI RAATTY 1 cut(s) 1125
AcuI CTGAAG 1 cut(s) 1050
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 575
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 5 cut(s) 28, 618, 920, 985, 1330
AgsI TTSAA 6 cut(s) 59, 290, 512, 702, 806, 1109
AhdI GACNNNNNGTC 1 cut(s) 161
AjnI CCWGG 2 cut(s) 21, 996
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AloI GAACNNNNNNTCC 2 cut(s) 1045, 1077
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 3 cut(s) 276, 657, 1138
AlwI GGATC 4 cut(s) 12, 25, 369, 1090
AoxI GGCC 7 cut(s) 32, 133, 277, 301, 457, 489, 976
ApeKI GCWGC 5 cut(s) 64, 81, 262, 407, 713
ApoI RAATTY 1 cut(s) 1125
AseI ATTAAT 1 cut(s) 842
Asp718I GGTACC 1 cut(s) 496
AspS9I GGNCC 5 cut(s) 32, 133, 187, 277, 489
AsuC2I CCSGG 2 cut(s) 185, 487
AsuHPI GGTGA 4 cut(s) 37, 202, 475, 866
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 2 cut(s) 459, 978
BamHI GGATCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 496
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 1038
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 5 cut(s) 51, 93, 274, 419, 700
BccI CCATC 6 cut(s) 188, 416, 575, 608, 851, 1012
BceAI ACGGC 1 cut(s) 634
BciT130I CCWGG 2 cut(s) 23, 998
BclI TGATCA 2 cut(s) 832, 1309
BcnI CCSGG 2 cut(s) 185, 487
BcoDI GTCTC 3 cut(s) 276, 657, 1138
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 3 cut(s) 65, 405, 1269
BfuAI ACCTGC 1 cut(s) 662
BisI GCNGC 8 cut(s) 65, 82, 93, 222, 263, 304, 408, 714
BlsI GCNGC 8 cut(s) 66, 83, 94, 223, 264, 305, 409, 715
Bme1390I CCNGG 4 cut(s) 23, 185, 487, 998
Bme18I GGWCC 1 cut(s) 187
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgT120I GGNCC 5 cut(s) 32, 133, 187, 277, 489
BmrFI CCNGG 4 cut(s) 23, 185, 487, 998
BmrI ACTGGG 2 cut(s) 23, 363
BmsI GCATC 2 cut(s) 62, 974
BmuI ACTGGG 2 cut(s) 23, 363
BpiI GAAGAC 1 cut(s) 1038
Bpu10I CCTNAGC 1 cut(s) 744
BpuMI CCSGG 2 cut(s) 185, 487
BsaBI GATNNNNATC 1 cut(s) 1314
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 8 cut(s) 21, 121, 256, 304, 486, 492, 642, 1176
BsaWI WCCGGW 2 cut(s) 392, 913
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 1137, 1167
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 618, 920, 985, 1330
Bse1I ACTGG 3 cut(s) 18, 358, 663
Bse3DI GCAATG 1 cut(s) 1161
Bse8I GATNNNNATC 1 cut(s) 1314
BseBI CCWGG 2 cut(s) 23, 998
BseDI CCNNGG 8 cut(s) 21, 121, 256, 304, 486, 492, 642, 1176
BseGI GGATG 3 cut(s) 180, 586, 1172
BseJI GATNNNNATC 1 cut(s) 1314
BseLI CCNNNNNNNGG 5 cut(s) 28, 618, 920, 985, 1330
BseMI GCAATG 1 cut(s) 1161
BseMII CTCAG 3 cut(s) 563, 1079, 1149
BseNI ACTGG 3 cut(s) 18, 358, 663
BseSI GKGCMC 1 cut(s) 231
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 5 cut(s) 51, 93, 274, 419, 700
BseYI CCCAGC 2 cut(s) 224, 294
Bsh1236I CGCG 2 cut(s) 50, 306
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 7 cut(s) 34, 135, 279, 303, 459, 491, 978
BshNI GGYRCC 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 4 cut(s) 184, 393, 486, 914
BslFI GGGAC 3 cut(s) 168, 173, 936
BslI CCNNNNNNNGG 5 cut(s) 28, 618, 920, 985, 1330
BsmAI GTCTC 3 cut(s) 276, 657, 1138
BsmBI CGTCTC 1 cut(s) 657
BsmFI GGGAC 3 cut(s) 168, 173, 936
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 7 cut(s) 34, 135, 279, 303, 459, 491, 978
Bso31I GGTCTC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 130, 231
Bsp143I GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
Bsp19I CCATGG 1 cut(s) 492
BspANI GGCC 7 cut(s) 34, 135, 279, 303, 459, 491, 978
BspCNI CTCAG 3 cut(s) 564, 1078, 1148
BspFNI CGCG 2 cut(s) 50, 306
BspHI TCATGA 1 cut(s) 99
BspMAI CTGCAG 2 cut(s) 69, 409
BspMI ACCTGC 1 cut(s) 662
BspPI GGATC 4 cut(s) 12, 25, 369, 1090
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 1161
BsrI ACTGG 3 cut(s) 18, 358, 663
BssECI CCNNGG 8 cut(s) 21, 121, 256, 304, 486, 492, 642, 1176
BssMI GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 4 cut(s) 256, 492, 642, 1176
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 23, 998
Bst4CI ACNGT 2 cut(s) 125, 706
Bst6I CTCTTC 1 cut(s) 1069
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 137, 461, 561
BstDEI CTNAG 5 cut(s) 572, 744, 869, 1065, 1135
BstDSI CCRYGG 3 cut(s) 121, 304, 492
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 3 cut(s) 180, 586, 1172
BstFNI CGCG 2 cut(s) 50, 306
BstKTI GATC 6 cut(s) 20, 54, 364, 835, 1085, 1312
BstMAI GTCTC 3 cut(s) 276, 657, 1138
BstMBI GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 47, 81, 386, 460
BstNI CCWGG 2 cut(s) 23, 998
BstNSI RCATGY 2 cut(s) 563, 760
BstSCI CCNGG 4 cut(s) 21, 183, 485, 996
BstSFI CTRYAG 3 cut(s) 65, 405, 1269
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 2 cut(s) 50, 306
BstV1I GCAGC 5 cut(s) 51, 93, 274, 419, 700
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 301
BsuRI GGCC 7 cut(s) 34, 135, 279, 303, 459, 491, 978
BtgI CCRYGG 3 cut(s) 121, 304, 492
BtsCI GGATG 3 cut(s) 180, 586, 1172
BtsIMutI CAGTG 2 cut(s) 569, 1143
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 3 cut(s) 137, 461, 561
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 5 cut(s) 32, 133, 187, 277, 489
Cfr42I CCGCGG 1 cut(s) 307
CseI GACGC 4 cut(s) 151, 176, 205, 378
Csp6I GTAC 1 cut(s) 497
CviAII CATG 9 cut(s) 76, 100, 151, 330, 493, 560, 757, 822, 1044
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 5 cut(s) 572, 744, 869, 1065, 1135
DpnI GATC 6 cut(s) 19, 53, 363, 834, 1084, 1311
DpnII GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
DraIII CACNNNGTG 1 cut(s) 575
DriI GACNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 3 cut(s) 301, 457, 976
EagI CGGCCG 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 1069
Eam1105I GACNNNNNGTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 1069
EclXI CGGCCG 1 cut(s) 301
Eco130I CCWWGG 4 cut(s) 256, 492, 642, 1176
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 1050
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 32, 187
EcoRII CCWGG 2 cut(s) 21, 996
EcoT14I CCWWGG 4 cut(s) 256, 492, 642, 1176
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 4 cut(s) 256, 492, 642, 1176
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 9 cut(s) 79, 103, 154, 333, 496, 563, 760, 825, 1047
FaqI GGGAC 3 cut(s) 168, 173, 936
FatI CATG 9 cut(s) 75, 99, 150, 329, 492, 559, 756, 821, 1043
FbaI TGATCA 2 cut(s) 832, 1309
FblI GTMKAC 2 cut(s) 165, 813
Fnu4HI GCNGC 8 cut(s) 65, 82, 93, 222, 263, 304, 408, 714
FokI GGATG 3 cut(s) 167, 593, 1159
Fsp4HI GCNGC 8 cut(s) 65, 82, 93, 222, 263, 304, 408, 714
FspBI CTAG 1 cut(s) 777
GluI GCNGC 8 cut(s) 65, 82, 93, 222, 263, 304, 408, 714
GsaI CCCAGC 2 cut(s) 228, 298
HaeIII GGCC 7 cut(s) 34, 135, 279, 303, 459, 491, 978
HapII CCGG 4 cut(s) 184, 393, 486, 914
HgaI GACGC 4 cut(s) 151, 176, 205, 378
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 9 cut(s) 79, 103, 154, 333, 496, 563, 760, 825, 1047
HincII GTYRAC 3 cut(s) 46, 166, 937
HindII GTYRAC 3 cut(s) 46, 166, 937
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 6 cut(s) 156, 326, 638, 662, 1054, 1265
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 4 cut(s) 184, 393, 486, 914
HphI GGTGA 4 cut(s) 37, 202, 475, 866
Hpy166II GTNNAC 5 cut(s) 46, 166, 370, 814, 937
Hpy188I TCNGA 1 cut(s) 1087
Hpy188III TCNNGA 7 cut(s) 100, 203, 504, 522, 1143, 1302, 1324
Hpy8I GTNNAC 5 cut(s) 46, 166, 370, 814, 937
Hpy99I CGWCG 5 cut(s) 116, 167, 170, 221, 1012
HpyAV CCTTC 7 cut(s) 22, 201, 324, 510, 728, 1103, 1112
HpyCH4III ACNGT 2 cut(s) 125, 706
HpyCH4IV ACGT 2 cut(s) 372, 885
HpyCH4V TGCA 5 cut(s) 67, 75, 407, 569, 1156
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 81, 386, 460
HpyF3I CTNAG 5 cut(s) 572, 744, 869, 1065, 1135
HpySE526I ACGT 2 cut(s) 372, 885
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 9 cut(s) 79, 103, 154, 333, 496, 563, 760, 825, 1047
KflI GGGWCCC 1 cut(s) 187
KpnI GGTACC 1 cut(s) 500
Ksp22I TGATCA 2 cut(s) 832, 1309
KspAI GTTAAC 1 cut(s) 46
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
LmnI GCTCC 4 cut(s) 646, 879, 1025, 1238
Lsp1109I GCAGC 5 cut(s) 51, 93, 274, 419, 700
LweI GCATC 2 cut(s) 62, 974
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 372, 885
MaeIII GTNAC 5 cut(s) 208, 247, 349, 481, 1039
MalI GATC 6 cut(s) 19, 53, 363, 834, 1084, 1311
MboI GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
MboII GAAGA 3 cut(s) 1043, 1086, 1227
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 130, 231
MlsI TGGCCA 2 cut(s) 459, 978
MluCI AATT 5 cut(s) 534, 587, 843, 990, 1125
MluNI TGGCCA 2 cut(s) 459, 978
MlyI GAGTC 2 cut(s) 150, 1259
MmeI TCCRAC 2 cut(s) 339, 1095
MnlI CCTC 8 cut(s) 45, 158, 210, 251, 571, 1070, 1139, 1267
Mox20I TGGCCA 2 cut(s) 459, 978
Mph1103I ATGCAT 1 cut(s) 77
MscI TGGCCA 2 cut(s) 459, 978
MseI TTAA 3 cut(s) 45, 537, 842
MslI CAYNNNNRTG 1 cut(s) 1048
Msp20I TGGCCA 2 cut(s) 459, 978
MspA1I CMGCKG 3 cut(s) 84, 224, 306
MspI CCGG 4 cut(s) 184, 393, 486, 914
MspR9I CCNGG 4 cut(s) 23, 185, 487, 998
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 2 cut(s) 23, 998
MvnI CGCG 2 cut(s) 50, 306
MwoI GCNNNNNNNGC 4 cut(s) 47, 81, 386, 460
NciI CCSGG 2 cut(s) 185, 487
NcoI CCATGG 1 cut(s) 492
NdeII GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
NlaIII CATG 9 cut(s) 79, 103, 154, 333, 496, 563, 760, 825, 1047
NmeAIII GCCGAG 3 cut(s) 138, 279, 305
NmuCI GTSAC 3 cut(s) 208, 247, 481
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 2 cut(s) 563, 760
PaeI GCATGC 1 cut(s) 563
PagI TCATGA 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 1156
PfeI GAWTC 4 cut(s) 326, 638, 662, 1054
PflMI CCANNNNNTGG 1 cut(s) 985
PkrI GCNGC 8 cut(s) 66, 83, 94, 223, 264, 305, 409, 715
PleI GAGTC 2 cut(s) 150, 1259
PpsI GAGTC 2 cut(s) 150, 1259
PpuMI RGGWCCY 1 cut(s) 187
PshBI ATTAAT 1 cut(s) 842
PsiI TTATAA 1 cut(s) 1019
Psp1406I AACGTT 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 21, 996
PspFI CCCAGC 2 cut(s) 224, 294
PspGI CCWGG 2 cut(s) 21, 996
PspPI GGNCC 5 cut(s) 32, 133, 187, 277, 489
PspPPI RGGWCCY 1 cut(s) 187
PstI CTGCAG 2 cut(s) 69, 409
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
RseI CAYNNNNRTG 1 cut(s) 1048
SacII CCGCGG 1 cut(s) 307
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 45, 537, 842
SatI GCNGC 8 cut(s) 65, 82, 93, 222, 263, 304, 408, 714
Sau3AI GATC 6 cut(s) 17, 51, 361, 832, 1082, 1309
Sau96I GGNCC 5 cut(s) 32, 133, 187, 277, 489
SchI GAGTC 2 cut(s) 150, 1259
ScrFI CCNGG 4 cut(s) 23, 185, 487, 998
SduI GDGCHC 2 cut(s) 130, 231
SfaNI GCATC 2 cut(s) 62, 974
SfcI CTRYAG 3 cut(s) 65, 405, 1269
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 1048
SphI GCATGC 1 cut(s) 563
Sse9I AATT 5 cut(s) 534, 587, 843, 990, 1125
SspI AATATT 1 cut(s) 1093
SspMI CTAG 1 cut(s) 777
StyD4I CCNGG 4 cut(s) 21, 183, 485, 996
StyI CCWWGG 4 cut(s) 256, 492, 642, 1176
TaaI ACNGT 2 cut(s) 125, 706
TaiI ACGT 2 cut(s) 375, 888
TaqI TCGA 4 cut(s) 165, 449, 1010, 1263
TasI AATT 5 cut(s) 534, 587, 843, 990, 1125
TauI GCSGC 3 cut(s) 95, 224, 306
TfiI GAWTC 4 cut(s) 326, 638, 662, 1054
Tru1I TTAA 3 cut(s) 45, 537, 842
Tru9I TTAA 3 cut(s) 45, 537, 842
TscAI CASTG 2 cut(s) 576, 1143
TseFI GTSAC 3 cut(s) 208, 247, 481
TseI GCWGC 5 cut(s) 64, 81, 262, 407, 713
Tsp45I GTSAC 3 cut(s) 208, 247, 481
TspDTI ATGAA 6 cut(s) 17, 318, 351, 810, 828, 1257
TspGWI ACGGA 2 cut(s) 129, 938
TspRI CASTG 2 cut(s) 576, 1143
Van91I CCANNNNNTGG 1 cut(s) 985
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 842
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 1125
XceI RCATGY 2 cut(s) 563, 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmiI GTMKAC 2 cut(s) 165, 813
XspI CTAG 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.