Rw0G010690

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00458
OG0000878
Physical Location & Seq
Reverse (-)
65644 .. 68790
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010690.1

Sequence Viewer

Length: 519 bp
ATGTTCAGAGAGCTAACACCATTGAGGGAAAGCGTGTGGTTCACTCGTTCAAGAACTACACCAAGCTCGAAAATGTGGGAGCTGTGCATAATCTACTGTAGATTTGAGTACGAGGCTGCTACTGGGGCTTTTACTCCTGATAGAGTTGCTTATCTGGGTGTTGATTCATTTGGTGATCATGAATTGGTGAATATCATGTCTGATCACTGTGATGTTCAGAGTGCTAACACCATTGAGGGAGAGTGTGTGGTTCACTCGTTCAAGAACTACACGATGCTCGGAAATGTGGGAGCTGAGCATTACTACTGTATGTTTGAGTACAAGGCTGCTACTGGGGCTTTTACTCCTGATAAGAGTTGCTACGTGAGTTTCCTGGTCTTTGCGTATTGCAAGTCTGAGATGCCGCATGACCTCATGGTGCAATGTGAGGAGTGCAAAGACTGGTTTCATCCAGCATGCGTGAACATCTCAAATGAAGTAGCCAAAAAATTGGTGGACCCTAAGCACCGAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

172

Amino Acids

19.82

Weight (kDa)

5.78

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 129 - 162 9.1e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 404
AfaI GTAC 2 cut(s) 110, 320
AgsI TTSAA 2 cut(s) 51, 262
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 4 cut(s) 13, 66, 82, 293
AluI AGCT 4 cut(s) 13, 66, 82, 293
ApeKI GCWGC 2 cut(s) 116, 326
AspS9I GGNCC 1 cut(s) 496
AsuHPI GGTGA 2 cut(s) 185, 199
AvaII GGWCC 1 cut(s) 496
BbvI GCAGC 2 cut(s) 103, 313
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 2 cut(s) 175, 202
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 3 cut(s) 117, 327, 404
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 3 cut(s) 118, 328, 405
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 1 cut(s) 374
BmrI ACTGGG 2 cut(s) 132, 342
BmsI GCATC 2 cut(s) 264, 390
BmuI ACTGGG 2 cut(s) 132, 342
Bpu10I CCTNAGC 1 cut(s) 501
Bpu1102I GCTNAGC 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 3 cut(s) 127, 337, 446
Bse3DI GCAATG 1 cut(s) 428
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 448
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 285, 387
BseNI ACTGG 3 cut(s) 127, 337, 446
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 2 cut(s) 103, 313
Bsp143I GATC 2 cut(s) 175, 202
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 1 cut(s) 404
BspCNI CTCAG 2 cut(s) 286, 388
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 428
BsrI ACTGG 3 cut(s) 127, 337, 446
BssMI GATC 2 cut(s) 175, 202
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 3 cut(s) 98, 209, 308
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 3 cut(s) 294, 396, 501
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 2 cut(s) 178, 205
BstMBI GATC 2 cut(s) 175, 202
BstMWI GCNNNNNNNGC 2 cut(s) 125, 335
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 103, 313
BstXI CCANNNNNNTGG 1 cut(s) 490
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 457
CciI TCATGA 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 496
Csp6I GTAC 2 cut(s) 109, 319
CviAII CATG 5 cut(s) 179, 196, 407, 415, 456
CviJI RGCY 9 cut(s) 13, 66, 82, 116, 128, 293, 326, 338, 482
CviKI_1 RGCY 9 cut(s) 13, 66, 82, 116, 128, 293, 326, 338, 482
CviQI GTAC 2 cut(s) 109, 319
DdeI CTNAG 3 cut(s) 294, 396, 501
DpnI GATC 2 cut(s) 177, 204
DpnII GATC 2 cut(s) 175, 202
Eco47I GGWCC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 372
FaeI CATG 5 cut(s) 182, 199, 410, 418, 459
FaiI YATR 7 cut(s) 89, 180, 197, 311, 408, 416, 457
FatI CATG 5 cut(s) 178, 195, 406, 414, 455
FbaI TGATCA 2 cut(s) 175, 202
Fnu4HI GCNGC 3 cut(s) 117, 327, 404
FokI GGATG 1 cut(s) 435
Fsp4HI GCNGC 3 cut(s) 117, 327, 404
GluI GCNGC 3 cut(s) 117, 327, 404
Hin1II CATG 5 cut(s) 182, 199, 410, 418, 459
HinfI GANTC 1 cut(s) 164
HphI GGTGA 2 cut(s) 185, 199
Hpy166II GTNNAC 4 cut(s) 42, 253, 463, 496
Hpy188I TCNGA 5 cut(s) 8, 202, 219, 281, 397
Hpy188III TCNNGA 5 cut(s) 51, 137, 179, 262, 347
Hpy8I GTNNAC 4 cut(s) 42, 253, 463, 496
HpyCH4III ACNGT 3 cut(s) 98, 209, 308
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 4 cut(s) 87, 390, 421, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 335
HpyF3I CTNAG 3 cut(s) 294, 396, 501
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 5 cut(s) 182, 199, 410, 418, 459
Ksp22I TGATCA 2 cut(s) 175, 202
Kzo9I GATC 2 cut(s) 175, 202
LmnI GCTCC 2 cut(s) 79, 290
LpnPI CCDG 9 cut(s) 108, 140, 150, 318, 359, 360, 386, 427, 465
Lsp1109I GCAGC 2 cut(s) 103, 313
LweI GCATC 2 cut(s) 264, 390
MaeII ACGT 1 cut(s) 363
MalI GATC 2 cut(s) 177, 204
MboI GATC 2 cut(s) 175, 202
MluCI AATT 2 cut(s) 182, 488
MnlI CCTC 5 cut(s) 18, 106, 229, 421, 422
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 125, 335
NdeII GATC 2 cut(s) 175, 202
NlaIII CATG 5 cut(s) 182, 199, 410, 418, 459
NlaIV GGNNCC 1 cut(s) 498
NspI RCATGY 1 cut(s) 459
PaeI GCATGC 1 cut(s) 459
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 118, 328, 405
Ppu21I YACGTR 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 496
RsaI GTAC 2 cut(s) 110, 320
RsaNI GTAC 2 cut(s) 109, 319
RseI CAYNNNNRTG 1 cut(s) 210
SatI GCNGC 3 cut(s) 117, 327, 404
Sau3AI GATC 2 cut(s) 175, 202
Sau96I GGNCC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 374
SetI ASST 6 cut(s) 15, 68, 84, 295, 366, 414
SfaNI GCATC 2 cut(s) 264, 390
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 210
SphI GCATGC 1 cut(s) 459
Sse9I AATT 2 cut(s) 182, 488
SsiI CCGC 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 98, 209, 308
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 182, 488
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 212
TseI GCWGC 2 cut(s) 116, 326
TspDTI ATGAA 4 cut(s) 156, 195, 437, 489
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 496
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.