Rh2DG150200

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000878
Physical Location & Seq
Forward (+)
12533112 .. 12534794
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG150200.1

Sequence Viewer

Length: 1008 bp
ATGCCAGGACTGGGATCACTGGTGAAGAACCAGCGTCTAGTAAACGCGGTTGTCCAAAGGTTTCAGAGATGCATGACCACCACAACAGCCGTCATGAGCTTCGGGGACGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACCCGGGTCCCTTCTCTACCTCCTGACATCACCAGCGTCACCGCCGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGCCAGCTCTGGGCTTGGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGAGATTCGTGGAATGAACCAAGGAGAGTAACGGGATTGGATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCCGCAGTCATTGGAGATGATGGTTCTTTGTGGGTTTGGGGAAAGTCAAAGCGTGGCCAGCTTGGTCTGGGAGAGCAAGTCATGGAGGCTGTGGTTCCTTCCCGAGTTGAAGCACTTGCTGGAGAAAAAATAACTAAGGATGCACTTGGTTGGGGGCATGTTCTTGCATTGACTGAGGATGGAAAGTTATTTGGTTGGGGTTATTTTGCTGATGGTAGGTTAGGAAGCATTAAAGAATCTCTGGAGACATCTCAACTGGAATCTACTTCCAATAATCAAGAACTGTCGAGTTCGTCTTTGGAAGCTGATGAGAAGCTGGTTTTAGAAGGAATGGCCAAGGAGAATAACATGCCAATAGTTTGGGAACCCAGTTTAGTGAGGGAACTACAGTGTATTGAAGTTGTAGACATTGCATGTGGTCTTGATCATTCATTAATTCTTTGTGGTGATGGGACACTACTGAGCTGTGGGAGCAGTGTATATGGTCAGTTGGGAAGAGAAAAACAGGATGTAGGATTGTTTCCTATGATATATGCTTCCGTCCAATGTCTATGGCAGCCGGGCTTGGCCATTCTTTGGCAATTTGCCAGGTTGCATCATCAGATGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

335

Amino Acids

36.09

Weight (kDa)

5.05

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 31 - 308 6.7e-53 RCC1-like domain
RCC1 PF00415 33 - 81 2.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 68 - 93 8.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 84 - 134 3.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 139 - 189 7e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 180 - 203 6e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 266 - 295 9.6e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 281
AccB7I CCANNNNNTGG 2 cut(s) 235, 972
AccI GTMKAC 1 cut(s) 801
AccII CGCG 1 cut(s) 47
AciI CCGC 3 cut(s) 47, 216, 399
AclWI GGATC 2 cut(s) 22, 363
AcoI YGGCCR 5 cut(s) 237, 295, 451, 729, 963
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 972
AgsI TTSAA 2 cut(s) 506, 794
AjnI CCWGG 3 cut(s) 4, 234, 983
AluBI AGCT 7 cut(s) 99, 259, 292, 457, 701, 712, 861
AluI AGCT 7 cut(s) 99, 259, 292, 457, 701, 712, 861
Alw26I GTCTC 2 cut(s) 270, 635
AlwI GGATC 2 cut(s) 22, 363
Ama87I CYCGRG 3 cut(s) 177, 281, 498
AoxI GGCC 9 cut(s) 148, 237, 253, 271, 285, 295, 451, 729, 963
ApeKI GCWGC 1 cut(s) 952
AseI ATTAAT 1 cut(s) 830
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 5 cut(s) 148, 181, 271, 286, 305
AsuC2I CCSGG 4 cut(s) 178, 179, 220, 957
AsuHPI GGTGA 4 cut(s) 34, 196, 205, 854
AvaI CYCGRG 3 cut(s) 177, 281, 498
AvaII GGWCC 2 cut(s) 181, 305
BalI TGGCCA 3 cut(s) 453, 731, 965
BanII GRGCYC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 964
BccI CCATC 4 cut(s) 410, 569, 602, 839
BceAI ACGGC 4 cut(s) 74, 124, 224, 282
BciT130I CCWGG 3 cut(s) 6, 236, 985
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 4 cut(s) 178, 179, 220, 957
BcoDI GTCTC 2 cut(s) 270, 635
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 782
BfoI RGCGCY 1 cut(s) 123
BisI GCNGC 1 cut(s) 953
BlsI GCNGC 1 cut(s) 954
Bme1390I CCNGG 7 cut(s) 6, 178, 179, 220, 236, 957, 985
Bme18I GGWCC 2 cut(s) 181, 305
BmeT110I CYCGRG 3 cut(s) 177, 281, 498
BmgT120I GGNCC 5 cut(s) 148, 181, 271, 286, 305
BmiI GGNNCC 5 cut(s) 182, 183, 272, 492, 762
BmrFI CCNGG 7 cut(s) 6, 178, 179, 220, 236, 957, 985
BmrI ACTGGG 2 cut(s) 20, 759
BmsI GCATC 4 cut(s) 59, 392, 526, 1000
BmuI ACTGGG 2 cut(s) 20, 759
BpmI CTGGAG 2 cut(s) 537, 659
BpuMI CCSGG 4 cut(s) 178, 179, 220, 957
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 7 cut(s) 115, 151, 177, 234, 298, 335, 732
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 972
Bse1I ACTGG 4 cut(s) 15, 24, 657, 765
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 3 cut(s) 6, 236, 985
BseDI CCNNGG 7 cut(s) 115, 151, 177, 234, 298, 335, 732
BseGI GGATG 4 cut(s) 383, 541, 580, 910
BseLI CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 972
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 2 cut(s) 561, 848
BseNI ACTGG 4 cut(s) 15, 24, 657, 765
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 964
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 9 cut(s) 150, 239, 255, 273, 287, 297, 453, 731, 965
BsiEI CGRYCG 1 cut(s) 298
BsiHKCI CYCGRG 3 cut(s) 177, 281, 498
BsiSI CCGG 4 cut(s) 178, 219, 387, 956
BslFI GGGAC 3 cut(s) 119, 167, 862
BslI CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 972
BsmAI GTCTC 2 cut(s) 270, 635
BsmFI GGGAC 3 cut(s) 119, 167, 862
BsnI GGCC 9 cut(s) 150, 239, 255, 273, 287, 297, 453, 731, 965
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 3 cut(s) 177, 281, 498
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 14, 355, 820
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 3 cut(s) 47, 216, 399
BspANI GGCC 9 cut(s) 150, 239, 255, 273, 287, 297, 453, 731, 965
BspCNI CTCAG 2 cut(s) 562, 849
BspFNI CGCG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 5 cut(s) 182, 183, 272, 492, 762
BspPI GGATC 2 cut(s) 22, 363
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 4 cut(s) 15, 24, 657, 765
BssECI CCNNGG 7 cut(s) 115, 151, 177, 234, 298, 335, 732
BssMI GATC 3 cut(s) 14, 355, 820
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 4 cut(s) 115, 151, 335, 732
Bst2UI CCWGG 3 cut(s) 6, 236, 985
Bst4CI ACNGT 2 cut(s) 681, 786
Bst6I CTCTTC 1 cut(s) 886
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 131, 257, 455
BstDEI CTNAG 3 cut(s) 531, 570, 857
BstDSI CCRYGG 2 cut(s) 115, 298
BstF5I GGATG 4 cut(s) 383, 541, 580, 910
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 17, 358, 823
BstMAI GTCTC 2 cut(s) 270, 635
BstMBI GATC 3 cut(s) 14, 355, 820
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 117, 126, 454, 867
BstNI CCWGG 3 cut(s) 6, 236, 985
BstNSI RCATGY 3 cut(s) 557, 748, 813
BstSCI CCNGG 7 cut(s) 4, 176, 177, 218, 234, 955, 983
BstSFI CTRYAG 1 cut(s) 782
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 756
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 9 cut(s) 150, 239, 255, 273, 287, 297, 453, 731, 965
BtgI CCRYGG 2 cut(s) 115, 298
BtsCI GGATG 4 cut(s) 383, 541, 580, 910
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 3 cut(s) 17, 791, 877
Cac8I GCNNGC 3 cut(s) 131, 257, 455
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 5 cut(s) 148, 181, 271, 286, 305
Cfr9I CCCGGG 1 cut(s) 177
CseI GACGC 3 cut(s) 23, 170, 199
CviAII CATG 7 cut(s) 73, 94, 116, 478, 554, 745, 810
DdeI CTNAG 3 cut(s) 531, 570, 857
DpnI GATC 3 cut(s) 16, 357, 822
DpnII GATC 3 cut(s) 14, 355, 820
EaeI YGGCCR 5 cut(s) 237, 295, 451, 729, 963
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 886
EarI CTCTTC 1 cut(s) 886
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 4 cut(s) 115, 151, 335, 732
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 181, 305
Eco52I CGGCCG 1 cut(s) 295
Eco88I CYCGRG 3 cut(s) 177, 281, 498
EcoO109I RGGNCCY 2 cut(s) 181, 305
EcoRII CCWGG 3 cut(s) 4, 234, 983
EcoT14I CCWWGG 4 cut(s) 115, 151, 335, 732
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 4 cut(s) 115, 151, 335, 732
FaeI CATG 7 cut(s) 76, 97, 119, 481, 557, 748, 813
FaqI GGGAC 3 cut(s) 119, 167, 862
FatI CATG 7 cut(s) 72, 93, 115, 477, 553, 744, 809
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 953
FokI GGATG 4 cut(s) 370, 548, 587, 917
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 953
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 953
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 2 cut(s) 537, 659
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 9 cut(s) 150, 239, 255, 273, 287, 297, 453, 731, 965
HapII CCGG 4 cut(s) 178, 219, 387, 956
HgaI GACGC 3 cut(s) 23, 170, 199
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 7 cut(s) 76, 97, 119, 481, 557, 748, 813
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 3 cut(s) 320, 632, 656
HpaII CCGG 4 cut(s) 178, 219, 387, 956
HphI GGTGA 4 cut(s) 34, 196, 205, 854
Hpy166II GTNNAC 3 cut(s) 43, 160, 802
Hpy188I TCNGA 4 cut(s) 66, 250, 315, 999
Hpy188III TCNNGA 6 cut(s) 94, 197, 498, 638, 674, 818
Hpy8I GTNNAC 3 cut(s) 43, 160, 802
HpyAV CCTTC 5 cut(s) 195, 245, 318, 504, 716
HpyCH4III ACNGT 2 cut(s) 681, 786
HpyCH4V TGCA 7 cut(s) 72, 377, 383, 539, 563, 809, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 126, 454, 867
HpyF3I CTNAG 3 cut(s) 531, 570, 857
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 7 cut(s) 76, 97, 119, 481, 557, 748, 813
HspAI GCGC 1 cut(s) 120
KflI GGGWCCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 3 cut(s) 14, 355, 820
LmnI GCTCC 1 cut(s) 867
Lsp1109I GCAGC 1 cut(s) 964
LweI GCATC 4 cut(s) 59, 392, 526, 1000
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 211, 241, 343
MalI GATC 3 cut(s) 16, 357, 822
MboI GATC 3 cut(s) 14, 355, 820
MboII GAAGA 2 cut(s) 37, 903
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 3 cut(s) 453, 731, 965
MluCI AATT 2 cut(s) 831, 977
MluNI TGGCCA 3 cut(s) 453, 731, 965
MnlI CCTC 7 cut(s) 204, 277, 290, 296, 475, 565, 768
Mox20I TGGCCA 3 cut(s) 453, 731, 965
Mph1103I ATGCAT 1 cut(s) 74
MscI TGGCCA 3 cut(s) 453, 731, 965
MseI TTAA 3 cut(s) 143, 627, 830
Msp20I TGGCCA 3 cut(s) 453, 731, 965
MspI CCGG 4 cut(s) 178, 219, 387, 956
MspR9I CCNGG 7 cut(s) 6, 178, 179, 220, 236, 957, 985
MvaI CCWGG 3 cut(s) 6, 236, 985
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 117, 126, 454, 867
NciI CCSGG 4 cut(s) 178, 179, 220, 957
NcoI CCATGG 1 cut(s) 115
NdeII GATC 3 cut(s) 14, 355, 820
NlaIII CATG 7 cut(s) 76, 97, 119, 481, 557, 748, 813
NlaIV GGNNCC 5 cut(s) 182, 183, 272, 492, 762
NmeAIII GCCGAG 2 cut(s) 273, 299
NmuCI GTSAC 2 cut(s) 211, 241
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 3 cut(s) 557, 748, 813
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 93
PfeI GAWTC 3 cut(s) 320, 632, 656
PflMI CCANNNNNTGG 2 cut(s) 235, 972
PkrI GCNGC 1 cut(s) 954
PpuMI RGGWCCY 2 cut(s) 181, 305
PshBI ATTAAT 1 cut(s) 830
Psp5II RGGWCCY 2 cut(s) 181, 305
Psp6I CCWGG 3 cut(s) 4, 234, 983
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 3 cut(s) 4, 234, 983
PspN4I GGNNCC 5 cut(s) 182, 183, 272, 492, 762
PspPI GGNCC 5 cut(s) 148, 181, 271, 286, 305
PspPPI RGGWCCY 2 cut(s) 181, 305
PspXI VCTCGAGB 1 cut(s) 281
SaqAI TTAA 3 cut(s) 143, 627, 830
SatI GCNGC 1 cut(s) 953
Sau3AI GATC 3 cut(s) 14, 355, 820
Sau96I GGNCC 5 cut(s) 148, 181, 271, 286, 305
ScrFI CCNGG 7 cut(s) 6, 178, 179, 220, 236, 957, 985
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 4 cut(s) 59, 392, 526, 1000
SfcI CTRYAG 1 cut(s) 782
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 2 cut(s) 181, 305
SlaI CTCGAG 1 cut(s) 281
SmaI CCCGGG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 831, 977
SsiI CCGC 3 cut(s) 47, 216, 399
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 7 cut(s) 4, 176, 177, 218, 234, 955, 983
StyI CCWWGG 4 cut(s) 115, 151, 335, 732
TaaI ACNGT 2 cut(s) 681, 786
TaqI TCGA 2 cut(s) 282, 683
TasI AATT 2 cut(s) 831, 977
TfiI GAWTC 3 cut(s) 320, 632, 656
Tru1I TTAA 3 cut(s) 143, 627, 830
Tru9I TTAA 3 cut(s) 143, 627, 830
TscAI CASTG 3 cut(s) 24, 791, 877
TseFI GTSAC 2 cut(s) 211, 241
TseI GCWGC 1 cut(s) 952
Tsp45I GTSAC 2 cut(s) 211, 241
TspDTI ATGAA 2 cut(s) 345, 816
TspGWI ACGGA 1 cut(s) 925
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 3 cut(s) 24, 791, 877
Van91I CCANNNNNTGG 2 cut(s) 235, 972
VpaK11BI GGWCC 2 cut(s) 181, 305
VspI ATTAAT 1 cut(s) 830
XceI RCATGY 3 cut(s) 557, 748, 813
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 296
XhoI CTCGAG 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.