Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002313.1

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

70148 .. 70562

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002313.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgaaagcaatcgacggcttgggagtgatgaccggcacttccagttcggaaatcccaaaactggttgattcatttggtgatcatgaattggtgaatgtcttttctgatcactgtgatgttcagagtgctaacaccattgagagaaagcgtgtggttcactcgttcaagaactacacgaagctcggaaatgtgggagctgagcattactactgtagatttgagtacaaggctgctactggggcttttactcctgatcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

86

Amino Acids

9.56

Weight (kDa)

6.39

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	181, 197
AluI	AGCT	2 cut(s)	181, 197
ApeKI	GCWGC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	89, 103
BbvI	GCAGC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	31
BclI	TGATCA	2 cut(s)	79, 106
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	3 cut(s)	42, 66, 241
BseCI	ATCGAT	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	42, 66, 241
BseXI	GCAGC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	79, 106, 253
Bsp1720I	GCTNAGC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	190
BspDI	ATCGAT	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	42, 66, 241
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	3 cut(s)	79, 106, 253
Bst4CI	ACNGT	2 cut(s)	113, 212
BstDEI	CTNAG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	82, 109, 256
BstMBI	GATC	3 cut(s)	79, 106, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	256
BsuTUI	ATCGAT	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	109
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	18, 181, 197, 230, 242
CviKI_1	RGCY	5 cut(s)	18, 181, 197, 230, 242
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	81, 108, 255
DpnII	GATC	3 cut(s)	79, 106, 253
FaeI	CATG	1 cut(s)	86
FaiI	YATR	1 cut(s)	84
FatI	CATG	1 cut(s)	82
FbaI	TGATCA	2 cut(s)	79, 106
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	89, 103
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	49, 106, 123, 185
Hpy188III	TCNNGA	3 cut(s)	83, 166, 251
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	113, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	86
Ksp22I	TGATCA	2 cut(s)	79, 106
Kzo9I	GATC	3 cut(s)	79, 106, 253
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	46, 47, 55, 222
Lsp1109I	GCAGC	1 cut(s)	217
MalI	GATC	3 cut(s)	81, 108, 255
MboI	GATC	3 cut(s)	79, 106, 253
MluCI	AATT	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	3 cut(s)	79, 106, 253
NlaIII	CATG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	114
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	79, 106, 253
SetI	ASST	2 cut(s)	183, 199
SfcI	CTRYAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	113, 212
TaqI	TCGA	2 cut(s)	12, 256
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	17, 60, 99
TspRI	CASTG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.