Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

2651180 .. 2652020

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACCCCCACAGCAGCTGCCATGAGCTTCGGGGACGGCAACCATGGCGCTCCAGGCTTGCCCACGTCCTCAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCTCTACCTCCTGACATCACCGGCGTCACCGCCGGGGCATTACCACTCCCTGGCCGTCACTTCCCAAGGTCAGCTTTGGGCATGGGGCCGAGACCTCGAGGCCCAGCTGGGCCGTGGAGAGATTCGTGGAATGAACCAATGAGAGTAACGGGATTGGATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCTGCGGCCATTGGAGATGATGGTTCTCTGTGGGTTTGGGGAAAGTCAAAGCGTGGCCAACTTGGTCTATCGGAGAGCAAGTCATGGAGGCTGTGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

138

Amino Acids

14.27

Weight (kDa)

9.1

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	8 - 131	8.4e-09	RCC1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	2 cut(s)	144, 317
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	3 cut(s)	166, 318, 367
AcyI	GRCGYC	2 cut(s)	90, 138
AfiI	CCNNNNNNNGG	2 cut(s)	85, 164
AjiI	CACGTC	1 cut(s)	66
AjnI	CCWGG	2 cut(s)	52, 163
AluBI	AGCT	4 cut(s)	17, 27, 188, 221
AluI	AGCT	4 cut(s)	17, 27, 188, 221
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	2 cut(s)	105, 210
AoxI	GGCC	7 cut(s)	76, 166, 200, 214, 224, 318, 367
ApeKI	GCWGC	2 cut(s)	14, 17
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	5 cut(s)	76, 109, 200, 215, 224
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	124, 133
AvaI	CYCGRG	2 cut(s)	105, 210
AvaII	GGWCC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	4, 26
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	3 cut(s)	52, 153, 211
BciT130I	CCWGG	2 cut(s)	54, 165
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	3 cut(s)	15, 18, 318
BlsI	GCNGC	3 cut(s)	16, 19, 319
Bme1390I	CCNGG	3 cut(s)	54, 148, 165
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	2 cut(s)	105, 210
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	5 cut(s)	76, 109, 200, 215, 224
BmiI	GGNNCC	3 cut(s)	110, 111, 201
BmrFI	CCNGG	3 cut(s)	54, 148, 165
BmsI	GCATC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	2 cut(s)	90, 138
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	6 cut(s)	43, 79, 147, 163, 179, 227
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 164
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	54, 165
BseDI	CCNNGG	6 cut(s)	43, 79, 147, 163, 179, 227
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	85, 164
BseXI	GCAGC	2 cut(s)	4, 26
BseYI	CCCAGC	2 cut(s)	217, 221
BshFI	GGCC	7 cut(s)	78, 168, 202, 216, 226, 320, 369
BsiHKCI	CYCGRG	2 cut(s)	105, 210
BsiSI	CCGG	3 cut(s)	135, 147, 303
BslFI	GGGAC	2 cut(s)	47, 95
BslI	CCNNNNNNNGG	2 cut(s)	85, 164
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	47, 95
BsnI	GGCC	7 cut(s)	78, 168, 202, 216, 226, 320, 369
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	2 cut(s)	105, 210
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	144, 317
BspANI	GGCC	7 cut(s)	78, 168, 202, 216, 226, 320, 369
BspLI	GGNNCC	3 cut(s)	110, 111, 201
BspPI	GGATC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	6 cut(s)	43, 79, 147, 163, 179, 227
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	2 cut(s)	90, 138
BssT1I	CCWWGG	3 cut(s)	43, 79, 179
Bst2UI	CCWGG	2 cut(s)	54, 165
BstACI	GRCGYC	2 cut(s)	90, 138
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	2 cut(s)	43, 227
BstF5I	GGATG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNI	CCWGG	2 cut(s)	54, 165
BstSCI	CCNGG	3 cut(s)	52, 146, 163
BstV1I	GCAGC	2 cut(s)	4, 26
BsuRI	GGCC	7 cut(s)	78, 168, 202, 216, 226, 320, 369
BtgI	CCRYGG	2 cut(s)	43, 227
BtrI	CACGTC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	5 cut(s)	76, 109, 200, 215, 224
CseI	GACGC	2 cut(s)	98, 127
CviAII	CATG	4 cut(s)	22, 44, 196, 396
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	3 cut(s)	166, 318, 367
Eco130I	CCWWGG	3 cut(s)	43, 79, 179
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	109
Eco88I	CYCGRG	2 cut(s)	105, 210
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	52, 163
EcoT14I	CCWWGG	3 cut(s)	43, 79, 179
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	3 cut(s)	43, 79, 179
FaeI	CATG	4 cut(s)	25, 47, 199, 399
FaiI	YATR	4 cut(s)	23, 45, 197, 397
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	47, 95
FatI	CATG	4 cut(s)	21, 43, 195, 395
Fnu4HI	GCNGC	3 cut(s)	15, 18, 318
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	15, 18, 318
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	15, 18, 318
GsaI	CCCAGC	2 cut(s)	221, 225
GsuI	CTGGAG	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	7 cut(s)	78, 168, 202, 216, 226, 320, 369
HapII	CCGG	3 cut(s)	135, 147, 303
HgaI	GACGC	2 cut(s)	98, 127
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	90, 138
Hin1II	CATG	4 cut(s)	25, 47, 199, 399
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	3 cut(s)	135, 147, 303
HphI	GGTGA	2 cut(s)	124, 133
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	293, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	2 cut(s)	90, 138
Hsp92II	CATG	4 cut(s)	25, 47, 199, 399
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	4, 26
LweI	GCATC	1 cut(s)	308
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	3 cut(s)	139, 170, 259
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	369
MnlI	CCTC	5 cut(s)	79, 132, 206, 219, 393
Mox20I	TGGCCA	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	17, 221
MspI	CCGG	3 cut(s)	135, 147, 303
MspR9I	CCNGG	3 cut(s)	54, 148, 165
MvaI	CCWGG	2 cut(s)	54, 165
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NciI	CCSGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	4 cut(s)	25, 47, 199, 399
NlaIV	GGNNCC	3 cut(s)	110, 111, 201
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	2 cut(s)	139, 170
PaeR7I	CTCGAG	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	16, 19, 319
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	52, 163
PspFI	CCCAGC	2 cut(s)	217, 221
PspGI	CCWGG	2 cut(s)	52, 163
PspN4I	GGNNCC	3 cut(s)	110, 111, 201
PspPI	GGNCC	5 cut(s)	76, 109, 200, 215, 224
PspPPI	RGGWCCY	1 cut(s)	109
PspXI	VCTCGAGB	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	17, 221
SatI	GCNGC	3 cut(s)	15, 18, 318
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	5 cut(s)	76, 109, 200, 215, 224
ScrFI	CCNGG	3 cut(s)	54, 148, 165
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	19, 29, 68, 124, 185, 190, 211, 223
SfaNI	GCATC	1 cut(s)	308
Sfr274I	CTCGAG	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SsiI	CCGC	2 cut(s)	144, 317
StyD4I	CCNGG	3 cut(s)	52, 146, 163
StyI	CCWWGG	3 cut(s)	43, 79, 179
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	211
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	236
TseFI	GTSAC	2 cut(s)	139, 170
TseI	GCWGC	2 cut(s)	14, 17
Tsp45I	GTSAC	2 cut(s)	139, 170
TspDTI	ATGAA	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 225
XhoI	CTCGAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.