Rh7BG466000

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000878
Physical Location & Seq
Forward (+)
55154925 .. 55155768
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG466000.1

Sequence Viewer

Length: 423 bp
ATGACCCCTACAACAGCTGCCATGAGCTTCGGGGCCGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACACCTACGAGCCCACTCGGGTCCCTTCTCTACCTCCTGACATCACCGGCGCCGGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGTCTGCTTTGGGCATGGGCCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCCCTTCTCCGAGAGATCCGTGGAATGAACCAATGAGAGTAACGGGACTGGATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCTGCGGCCATTGGAGATGATGGTTCTCTGTGGGTTTGGGGAAAGTCGAAGCGTGGCCAACTTGGTCTCTGGGAGAGCAAGTCATGGAGGCTGTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

140

Amino Acids

14.92

Weight (kDa)

10.74

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 9 - 132 6.9e-08 RCC1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 1 cut(s) 326
AclWI GGATC 2 cut(s) 239, 288
AcoI YGGCCR 4 cut(s) 160, 218, 327, 376
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 85, 141, 158
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 3 cut(s) 17, 27, 215
AluI AGCT 3 cut(s) 17, 27, 215
Alw26I GTCTC 2 cut(s) 193, 392
AlwI GGATC 2 cut(s) 239, 288
Ama87I CYCGRG 3 cut(s) 105, 196, 204
AoxI GGCC 8 cut(s) 33, 76, 160, 193, 208, 218, 327, 376
ApaI GGGCCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 2 cut(s) 50, 140
AspS9I GGNCC 7 cut(s) 33, 76, 109, 193, 194, 209, 228
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 3 cut(s) 105, 196, 204
AvaII GGWCC 2 cut(s) 109, 228
BaeGI GKGCMC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 2 cut(s) 102, 197
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 335
BceAI ACGGC 2 cut(s) 147, 205
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 193, 392
BfoI RGCGCY 2 cut(s) 51, 141
BisI GCNGC 2 cut(s) 18, 327
BlsI GCNGC 2 cut(s) 19, 328
Bme1390I CCNGG 2 cut(s) 142, 159
Bme18I GGWCC 2 cut(s) 109, 228
BmeT110I CYCGRG 3 cut(s) 105, 196, 204
BmgT120I GGNCC 7 cut(s) 33, 76, 109, 193, 194, 209, 228
BmiI GGNNCC 6 cut(s) 34, 110, 111, 139, 195, 230
BmrFI CCNGG 2 cut(s) 142, 159
BmsI GCATC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 193, 392
BsaJI CCNNGG 6 cut(s) 43, 79, 141, 157, 221, 248
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 141, 158
Bse118I RCCGGY 2 cut(s) 35, 134
Bse1I ACTGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 6 cut(s) 43, 79, 141, 157, 221, 248
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 3 cut(s) 85, 141, 158
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 197
BseX3I CGGCCG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 8 cut(s) 35, 78, 162, 195, 210, 220, 329, 378
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 221
BsiHKCI CYCGRG 3 cut(s) 105, 196, 204
BsiSI CCGG 4 cut(s) 36, 135, 141, 312
BslFI GGGAC 3 cut(s) 95, 214, 288
BslI CCNNNNNNNGG 3 cut(s) 85, 141, 158
BsmAI GTCTC 2 cut(s) 193, 392
BsmFI GGGAC 3 cut(s) 95, 214, 288
BsnI GGCC 8 cut(s) 35, 78, 162, 195, 210, 220, 329, 378
Bso31I GGTCTC 2 cut(s) 193, 392
BsoBI CYCGRG 3 cut(s) 105, 196, 204
Bsp120I GGGCCC 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 102, 197
Bsp143I GATC 2 cut(s) 244, 280
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 1 cut(s) 326
BspANI GGCC 8 cut(s) 35, 78, 162, 195, 210, 220, 329, 378
BspLI GGNNCC 6 cut(s) 34, 110, 111, 139, 195, 230
BspPI GGATC 2 cut(s) 239, 288
BspT107I GGYRCC 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 193, 392
BsrFI RCCGGY 2 cut(s) 35, 134
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 2 cut(s) 35, 134
BssECI CCNNGG 6 cut(s) 43, 79, 141, 157, 221, 248
BssMI GATC 2 cut(s) 244, 280
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 43, 79
Bst2UI CCWGG 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 37, 59
BstDSI CCRYGG 3 cut(s) 43, 221, 248
BstF5I GGATG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 51, 141
BstHHI GCGC 2 cut(s) 50, 140
BstKTI GATC 2 cut(s) 247, 283
BstMAI GTCTC 2 cut(s) 193, 392
BstMBI GATC 2 cut(s) 244, 280
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 2 cut(s) 45, 54
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 140, 157
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BstZI CGGCCG 1 cut(s) 218
BsuRI GGCC 8 cut(s) 35, 78, 162, 195, 210, 220, 329, 378
BtgI CCRYGG 3 cut(s) 43, 221, 248
BtsCI GGATG 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 37, 59
CfoI GCGC 2 cut(s) 50, 140
Cfr10I RCCGGY 2 cut(s) 35, 134
Cfr13I GGNCC 7 cut(s) 33, 76, 109, 193, 194, 209, 228
CviAII CATG 4 cut(s) 22, 44, 190, 405
DinI GGCGCC 1 cut(s) 139
DpnI GATC 2 cut(s) 246, 282
DpnII GATC 2 cut(s) 244, 280
EaeI YGGCCR 4 cut(s) 160, 218, 327, 376
EagI CGGCCG 1 cut(s) 218
EclXI CGGCCG 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 43, 79
Eco24I GRGCYC 2 cut(s) 102, 197
Eco31I GGTCTC 2 cut(s) 193, 392
Eco47I GGWCC 2 cut(s) 109, 228
Eco52I CGGCCG 1 cut(s) 218
Eco88I CYCGRG 3 cut(s) 105, 196, 204
EcoO109I RGGNCCY 2 cut(s) 109, 228
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 43, 79
EcoT38I GRGCYC 2 cut(s) 102, 197
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
ErhI CCWWGG 2 cut(s) 43, 79
FaeI CATG 4 cut(s) 25, 47, 193, 408
FaiI YATR 4 cut(s) 23, 45, 191, 406
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 3 cut(s) 95, 214, 288
FatI CATG 4 cut(s) 21, 43, 189, 404
Fnu4HI GCNGC 2 cut(s) 18, 327
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 2 cut(s) 102, 197
Fsp4HI GCNGC 2 cut(s) 18, 327
GlaI GCGC 2 cut(s) 49, 139
GluI GCNGC 2 cut(s) 18, 327
GsaI CCCAGC 1 cut(s) 215
HaeII RGCGCY 2 cut(s) 51, 141
HaeIII GGCC 8 cut(s) 35, 78, 162, 195, 210, 220, 329, 378
HapII CCGG 4 cut(s) 36, 135, 141, 312
HhaI GCGC 2 cut(s) 50, 140
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 4 cut(s) 25, 47, 193, 408
Hin6I GCGC 2 cut(s) 48, 138
HinP1I GCGC 2 cut(s) 48, 138
HpaII CCGG 4 cut(s) 36, 135, 141, 312
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 173, 240
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 123, 168, 243
HpyCH4V TGCA 2 cut(s) 302, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 54
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 4 cut(s) 25, 47, 193, 408
HspAI GCGC 2 cut(s) 48, 138
KasI GGCGCC 1 cut(s) 137
KflI GGGWCCC 1 cut(s) 109
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 244, 280
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 164, 268
MalI GATC 2 cut(s) 246, 282
MboI GATC 2 cut(s) 244, 280
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 102, 197
MlsI TGGCCA 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 378
Mly113I GGCGCC 1 cut(s) 138
MnlI CCTC 5 cut(s) 132, 200, 213, 219, 402
Mox20I TGGCCA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 35
MscI TGGCCA 1 cut(s) 378
MseI TTAA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 4 cut(s) 36, 135, 141, 312
MspR9I CCNGG 2 cut(s) 142, 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 45, 54
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 43
NdeII GATC 2 cut(s) 244, 280
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 4 cut(s) 25, 47, 193, 408
NlaIV GGNNCC 6 cut(s) 34, 110, 111, 139, 195, 230
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 2 cut(s) 19, 328
PluTI GGCGCC 1 cut(s) 141
PpuMI RGGWCCY 2 cut(s) 109, 228
Psp5II RGGWCCY 2 cut(s) 109, 228
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 6 cut(s) 34, 110, 111, 139, 195, 230
PspOMI GGGCCC 1 cut(s) 193
PspPI GGNCC 7 cut(s) 33, 76, 109, 193, 194, 209, 228
PspPPI RGGWCCY 2 cut(s) 109, 228
PspXI VCTCGAGB 1 cut(s) 204
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 18, 327
Sau3AI GATC 2 cut(s) 244, 280
Sau96I GGNCC 7 cut(s) 33, 76, 109, 193, 194, 209, 228
ScrFI CCNGG 2 cut(s) 142, 159
SduI GDGCHC 2 cut(s) 102, 197
SetI ASST 8 cut(s) 19, 29, 95, 124, 179, 205, 217, 230
SfaNI GCATC 1 cut(s) 317
SfoI GGCGCC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 204
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 109, 228
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SsiI CCGC 1 cut(s) 326
SspDI GGCGCC 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 140, 157
StyI CCWWGG 2 cut(s) 43, 79
TaqI TCGA 2 cut(s) 205, 368
TauI GCSGC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 109, 228
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 219
XhoI CTCGAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.