Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

69453045 .. 69453729

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG494000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGACCCCCACAACAGCTGCCATGAGCTTCGGGGACGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCCCTACCTCCTGACATCACCGGCGTCACCGCCGGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGTCAGCTTTGGGCATGGCGGCCGAGACCTCGAGGCCCAGCTCGGCTGTGGAGGTCCTTCTCCGAGAGATTCGTGGAATGAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

89

Amino Acids

9.2

Weight (kDa)

6.71

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	211
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	2 cut(s)	144, 200
AcoI	YGGCCR	2 cut(s)	166, 201
AcyI	GRCGYC	2 cut(s)	90, 138
AfiI	CCNNNNNNNGG	2 cut(s)	85, 164
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	4 cut(s)	17, 27, 188, 222
AluI	AGCT	4 cut(s)	17, 27, 188, 222
Alw26I	GTCTC	1 cut(s)	200
Ama87I	CYCGRG	2 cut(s)	105, 211
AoxI	GGCC	4 cut(s)	76, 166, 201, 215
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	76, 109, 216, 235
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	124, 133
AvaI	CYCGRG	2 cut(s)	105, 211
AvaII	GGWCC	2 cut(s)	109, 235
BanII	GRGCYC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	4
BceAI	ACGGC	2 cut(s)	52, 153
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	2 cut(s)	18, 201
BlsI	GCNGC	2 cut(s)	19, 202
Bme1390I	CCNGG	2 cut(s)	148, 165
Bme18I	GGWCC	2 cut(s)	109, 235
BmeT110I	CYCGRG	2 cut(s)	105, 211
BmgT120I	GGNCC	4 cut(s)	76, 109, 216, 235
BmiI	GGNNCC	2 cut(s)	110, 111
BmrFI	CCNGG	2 cut(s)	148, 165
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	2 cut(s)	90, 138
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	43, 79, 147, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 164
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	4 cut(s)	43, 79, 147, 163
BseLI	CCNNNNNNNGG	2 cut(s)	85, 164
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	78, 168, 203, 217
BsiEI	CGRYCG	1 cut(s)	204
BsiHKCI	CYCGRG	2 cut(s)	105, 211
BsiSI	CCGG	2 cut(s)	135, 147
BslFI	GGGAC	2 cut(s)	47, 95
BslI	CCNNNNNNNGG	2 cut(s)	85, 164
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	47, 95
BsnI	GGCC	4 cut(s)	78, 168, 203, 217
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	2 cut(s)	105, 211
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	144, 200
BspANI	GGCC	4 cut(s)	78, 168, 203, 217
BspLI	GGNNCC	2 cut(s)	110, 111
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	4 cut(s)	43, 79, 147, 163
BssNI	GRCGYC	2 cut(s)	90, 138
BssT1I	CCWWGG	2 cut(s)	43, 79
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	2 cut(s)	90, 138
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	200
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	146, 163
BstV1I	GCAGC	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	78, 168, 203, 217
BtgI	CCRYGG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	76, 109, 216, 235
CseI	GACGC	2 cut(s)	98, 127
CviAII	CATG	3 cut(s)	22, 44, 196
EaeI	YGGCCR	2 cut(s)	166, 201
EagI	CGGCCG	1 cut(s)	201
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	43, 79
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	109, 235
Eco52I	CGGCCG	1 cut(s)	201
Eco88I	CYCGRG	2 cut(s)	105, 211
EcoO109I	RGGNCCY	2 cut(s)	109, 235
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	43, 79
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	43, 79
FaeI	CATG	3 cut(s)	25, 47, 199
FaiI	YATR	3 cut(s)	23, 45, 197
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	47, 95
FatI	CATG	3 cut(s)	21, 43, 195
Fnu4HI	GCNGC	2 cut(s)	18, 201
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	18, 201
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	18, 201
GsaI	CCCAGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	4 cut(s)	78, 168, 203, 217
HapII	CCGG	2 cut(s)	135, 147
HgaI	GACGC	2 cut(s)	98, 127
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	90, 138
Hin1II	CATG	3 cut(s)	25, 47, 199
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	135, 147
HphI	GGTGA	2 cut(s)	124, 133
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	179, 245
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	123, 174, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
Hsp92I	GRCGYC	2 cut(s)	90, 138
Hsp92II	CATG	3 cut(s)	25, 47, 199
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	38, 138, 148, 150, 160, 177, 232
Lsp1109I	GCAGC	1 cut(s)	4
MaeIII	GTNAC	2 cut(s)	139, 170
MhlI	GDGCHC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	132, 207, 220, 226
MseI	TTAA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	135, 147
MspR9I	CCNGG	2 cut(s)	148, 165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NciI	CCSGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	43
NlaIII	CATG	3 cut(s)	25, 47, 199
NlaIV	GGNNCC	2 cut(s)	110, 111
NmeAIII	GCCGAG	2 cut(s)	203, 229
NmuCI	GTSAC	2 cut(s)	139, 170
PaeR7I	CTCGAG	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	19, 202
PpuMI	RGGWCCY	2 cut(s)	109, 235
Psp5II	RGGWCCY	2 cut(s)	109, 235
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	110, 111
PspPI	GGNCC	4 cut(s)	76, 109, 216, 235
PspPPI	RGGWCCY	2 cut(s)	109, 235
PspXI	VCTCGAGB	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	18, 201
Sau96I	GGNCC	4 cut(s)	76, 109, 216, 235
ScrFI	CCNGG	2 cut(s)	148, 165
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	19, 29, 124, 185, 190, 212, 224, 237
Sfr274I	CTCGAG	1 cut(s)	211
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	109, 235
SlaI	CTCGAG	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SsiI	CCGC	2 cut(s)	144, 200
StyD4I	CCNGG	2 cut(s)	146, 163
StyI	CCWWGG	2 cut(s)	43, 79
TaqI	TCGA	1 cut(s)	212
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	2 cut(s)	139, 170
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	139, 170
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	109, 235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 226
XhoI	CTCGAG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.