Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

65342583 .. 65344794

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGACCCCTACAACAGCTGCCATGAGCTTCGGGGCCGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCTCTACCTCCTGACATCACCGGCGTGACGCCGGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGTCAGCTTTGGGCATGGGCCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGGTGGACCCTAAGCACCGAAACAAATGGCTTAAATTGCAAGAGGCGATACAAAATGCAGTGCTGCTGTTTGTGTTCTTGCTGGTGCTCTTGGATTGCTATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

116

Amino Acids

12.47

Weight (kDa)

7.59

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	8 - 86	3.3e-12	RCC1-like domain
RCC1	PF00415	9 - 57	3.8e-06	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	165, 223
AcyI	GRCGYC	2 cut(s)	90, 143
AfiI	CCNNNNNNNGG	2 cut(s)	85, 163
AjnI	CCWGG	1 cut(s)	162
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	4 cut(s)	17, 27, 187, 220
AluI	AGCT	4 cut(s)	17, 27, 187, 220
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	198
Ama87I	CYCGRG	3 cut(s)	105, 201, 209
AoxI	GGCC	6 cut(s)	33, 76, 165, 198, 213, 223
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	17, 306
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	8 cut(s)	33, 76, 109, 198, 199, 214, 233, 249
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	3 cut(s)	105, 201, 209
AvaII	GGWCC	3 cut(s)	109, 233, 249
BaeGI	GKGCMC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	102, 202
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	4, 293
BceAI	ACGGC	2 cut(s)	152, 210
BciT130I	CCWGG	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	2 cut(s)	18, 307
BlsI	GCNGC	2 cut(s)	19, 308
Bme1390I	CCNGG	2 cut(s)	147, 164
Bme18I	GGWCC	3 cut(s)	109, 233, 249
BmeT110I	CYCGRG	3 cut(s)	105, 201, 209
BmgT120I	GGNCC	8 cut(s)	33, 76, 109, 198, 199, 214, 233, 249
BmiI	GGNNCC	5 cut(s)	34, 110, 111, 200, 251
BmrFI	CCNGG	2 cut(s)	147, 164
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	90, 143
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	6 cut(s)	43, 79, 146, 162, 226, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 163
Bse118I	RCCGGY	2 cut(s)	35, 134
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	6 cut(s)	43, 79, 146, 162, 226, 242
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	85, 163
BseSI	GKGCMC	1 cut(s)	202
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	4, 293
BseYI	CCCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	6 cut(s)	35, 78, 167, 200, 215, 225
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	3 cut(s)	105, 201, 209
BsiSI	CCGG	3 cut(s)	36, 135, 146
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	85, 163
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	6 cut(s)	35, 78, 167, 200, 215, 225
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	3 cut(s)	105, 201, 209
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	3 cut(s)	102, 202, 332
Bsp19I	CCATGG	1 cut(s)	43
BspANI	GGCC	6 cut(s)	35, 78, 167, 200, 215, 225
BspLI	GGNNCC	5 cut(s)	34, 110, 111, 200, 251
BspTNI	GGTCTC	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	35, 134
BssAI	RCCGGY	2 cut(s)	35, 134
BssECI	CCNNGG	6 cut(s)	43, 79, 146, 162, 226, 242
BssNI	GRCGYC	2 cut(s)	90, 143
BssT1I	CCWWGG	2 cut(s)	43, 79
Bst2UI	CCWGG	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	90, 143
BstC8I	GCNNGC	2 cut(s)	37, 59
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	2 cut(s)	43, 226
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 54, 279
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	145, 162
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	4, 293
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	6 cut(s)	35, 78, 167, 200, 215, 225
BtgI	CCRYGG	2 cut(s)	43, 226
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	2 cut(s)	37, 59
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	35, 134
Cfr13I	GGNCC	8 cut(s)	33, 76, 109, 198, 199, 214, 233, 249
CseI	GACGC	2 cut(s)	98, 151
CviAII	CATG	4 cut(s)	22, 44, 195, 346
DdeI	CTNAG	1 cut(s)	254
EaeI	YGGCCR	2 cut(s)	165, 223
EagI	CGGCCG	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	43, 79
Eco24I	GRGCYC	2 cut(s)	102, 202
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	109, 233, 249
Eco52I	CGGCCG	1 cut(s)	223
Eco88I	CYCGRG	3 cut(s)	105, 201, 209
EcoO109I	RGGNCCY	2 cut(s)	109, 233
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	43, 79
EcoT38I	GRGCYC	2 cut(s)	102, 202
ErhI	CCWWGG	2 cut(s)	43, 79
FaeI	CATG	4 cut(s)	25, 47, 198, 349
FaiI	YATR	4 cut(s)	23, 45, 196, 347
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	4 cut(s)	21, 43, 194, 345
Fnu4HI	GCNGC	2 cut(s)	18, 307
FriOI	GRGCYC	2 cut(s)	102, 202
Fsp4HI	GCNGC	2 cut(s)	18, 307
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	18, 307
GsaI	CCCAGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	6 cut(s)	35, 78, 167, 200, 215, 225
HapII	CCGG	3 cut(s)	36, 135, 146
HgaI	GACGC	2 cut(s)	98, 151
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	90, 143
Hin1II	CATG	4 cut(s)	25, 47, 198, 349
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	36, 135, 146
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	88, 249
Hpy188I	TCNGA	2 cut(s)	178, 243
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	2 cut(s)	88, 249
HpyAV	CCTTC	3 cut(s)	123, 173, 246
HpyCH4V	TGCA	2 cut(s)	282, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 54, 279
HpyF3I	CTNAG	1 cut(s)	254
Hsp92I	GRCGYC	2 cut(s)	90, 143
Hsp92II	CATG	4 cut(s)	25, 47, 198, 349
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	38, 49, 138, 148, 149, 159, 176, 230, 310
Lsp1109I	GCAGC	2 cut(s)	4, 293
MaeIII	GTNAC	2 cut(s)	139, 169
MhlI	GDGCHC	3 cut(s)	102, 202, 332
MluCI	AATT	1 cut(s)	277
MnlI	CCTC	6 cut(s)	132, 205, 218, 224, 237, 279
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	2 cut(s)	71, 275
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	3 cut(s)	36, 135, 146
MspR9I	CCNGG	2 cut(s)	147, 164
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	45, 54, 279
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	4 cut(s)	25, 47, 198, 349
NlaIV	GGNNCC	5 cut(s)	34, 110, 111, 200, 251
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	139, 169
OliI	CACNNNNGTG	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	19, 308
PpuMI	RGGWCCY	2 cut(s)	109, 233
Psp5II	RGGWCCY	2 cut(s)	109, 233
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	5 cut(s)	34, 110, 111, 200, 251
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	8 cut(s)	33, 76, 109, 198, 199, 214, 233, 249
PspPPI	RGGWCCY	2 cut(s)	109, 233
PspXI	VCTCGAGB	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	71, 275
SatI	GCNGC	2 cut(s)	18, 307
Sau96I	GGNCC	8 cut(s)	33, 76, 109, 198, 199, 214, 233, 249
ScrFI	CCNGG	2 cut(s)	147, 164
SduI	GDGCHC	3 cut(s)	102, 202, 332
SetI	ASST	9 cut(s)	19, 29, 124, 184, 189, 210, 222, 235, 248
Sfr274I	CTCGAG	1 cut(s)	209
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	109, 233, 249
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	145, 162
StyI	CCWWGG	2 cut(s)	43, 79
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	277
Tru1I	TTAA	2 cut(s)	71, 275
Tru9I	TTAA	2 cut(s)	71, 275
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	139, 169
TseI	GCWGC	2 cut(s)	17, 306
Tsp45I	GTSAC	2 cut(s)	139, 169
TspRI	CASTG	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	3 cut(s)	109, 233, 249
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 224
XhoI	CTCGAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.