Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004821.1

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

81675 .. 82505

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004821.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgatccccacaacagctgccatgagcttcggggacggcaaccatggcgctctgggcttgcccacttccttaatgggccttggtgtggacgcctacgagcccagtcgggtcccttctctacctcctgacatcaccggcgtcacccccggggcattaccattccctggccgtcacttccgaaggtcagctttgagcatgggcccgagacctcgaggcctagctcggccgtggagccttttatatgaagcatttgttatcattggccgtgattcgtggaatgaaccaatgagagtaacgggactggatcaagtaaatgtttgttctgcatttgcatccggtgtcatttctgcggccattggagatgatggttctctgtgggtttggggaaagtcaaagcgtggccaacttggtctgggagagctagtcatggaggctgtggagttgaagcacttgctggagagaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

155

Amino Acids

16.54

Weight (kDa)

7.95

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	5 cut(s)	166, 224, 262, 351, 400
AcyI	GRCGYC	2 cut(s)	90, 138
AfiI	CCNNNNNNNGG	2 cut(s)	85, 164
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	5 cut(s)	17, 27, 188, 221, 421
AluI	AGCT	5 cut(s)	17, 27, 188, 221, 421
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	3 cut(s)	146, 202, 210
AoxI	GGCC	8 cut(s)	76, 166, 199, 214, 224, 262, 351, 400
ApaI	GGGCCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	76, 109, 199, 200
AsuC2I	CCSGG	2 cut(s)	147, 148
AsuHPI	GGTGA	2 cut(s)	124, 133
AvaI	CYCGRG	3 cut(s)	146, 202, 210
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	402
BanII	GRGCYC	2 cut(s)	102, 203
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	4 cut(s)	52, 153, 211, 249
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	147, 148
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	218, 422
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	2 cut(s)	18, 351
BlsI	GCNGC	2 cut(s)	19, 352
Bme1390I	CCNGG	3 cut(s)	147, 148, 165
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	3 cut(s)	146, 202, 210
BmgT120I	GGNCC	4 cut(s)	76, 109, 199, 200
BmiI	GGNNCC	4 cut(s)	110, 111, 201, 233
BmrFI	CCNGG	3 cut(s)	147, 148, 165
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	96
BpuMI	CCSGG	2 cut(s)	147, 148
BsaHI	GRCGYC	2 cut(s)	90, 138
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	7 cut(s)	43, 79, 145, 146, 147, 163, 227
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 164
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	102, 306
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	7 cut(s)	43, 79, 145, 146, 147, 163, 227
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	85, 164
BseNI	ACTGG	2 cut(s)	102, 306
BseSI	GKGCMC	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	4
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 264, 353, 402
BsiEI	CGRYCG	1 cut(s)	227
BsiHKCI	CYCGRG	3 cut(s)	146, 202, 210
BsiSI	CCGG	3 cut(s)	135, 147, 336
BslFI	GGGAC	3 cut(s)	47, 95, 312
BslI	CCNNNNNNNGG	2 cut(s)	85, 164
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	3 cut(s)	47, 95, 312
BsnI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 264, 353, 402
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	3 cut(s)	146, 202, 210
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	102, 203
Bsp143I	GATC	2 cut(s)	3, 304
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 264, 353, 402
BspLI	GGNNCC	4 cut(s)	110, 111, 201, 233
BspPI	GGATC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	102, 306
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	7 cut(s)	43, 79, 145, 146, 147, 163, 227
BssMI	GATC	2 cut(s)	3, 304
BssNI	GRCGYC	2 cut(s)	90, 138
BssT1I	CCWWGG	2 cut(s)	43, 79
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	2 cut(s)	90, 138
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	2 cut(s)	43, 227
BstF5I	GGATG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	6, 307
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	3, 304
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	3 cut(s)	145, 146, 163
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	224
BsuRI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 264, 353, 402
BtgI	CCRYGG	2 cut(s)	43, 227
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	76, 109, 199, 200
Cfr9I	CCCGGG	1 cut(s)	146
CseI	GACGC	2 cut(s)	98, 127
CviAII	CATG	4 cut(s)	22, 44, 196, 427
DpnI	GATC	2 cut(s)	5, 306
DpnII	GATC	2 cut(s)	3, 304
EaeI	YGGCCR	5 cut(s)	166, 224, 262, 351, 400
EagI	CGGCCG	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	43, 79
Eco147I	AGGCCT	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	102, 203
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	109
Eco52I	CGGCCG	1 cut(s)	224
Eco88I	CYCGRG	3 cut(s)	146, 202, 210
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	43, 79
EcoT38I	GRGCYC	2 cut(s)	102, 203
ErhI	CCWWGG	2 cut(s)	43, 79
FaeI	CATG	4 cut(s)	25, 47, 199, 430
FaiI	YATR	6 cut(s)	23, 45, 197, 241, 243, 428
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	3 cut(s)	47, 95, 312
FatI	CATG	4 cut(s)	21, 43, 195, 426
Fnu4HI	GCNGC	2 cut(s)	18, 351
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	2 cut(s)	102, 203
Fsp4HI	GCNGC	2 cut(s)	18, 351
FspBI	CTAG	2 cut(s)	218, 422
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	18, 351
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	8 cut(s)	78, 168, 201, 216, 226, 264, 353, 402
HapII	CCGG	3 cut(s)	135, 147, 336
HgaI	GACGC	2 cut(s)	98, 127
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	90, 138
Hin1II	CATG	4 cut(s)	25, 47, 199, 430
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	3 cut(s)	135, 147, 336
HphI	GGTGA	2 cut(s)	124, 133
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	123, 174
HpyCH4V	TGCA	2 cut(s)	326, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
Hsp92I	GRCGYC	2 cut(s)	90, 138
Hsp92II	CATG	4 cut(s)	25, 47, 199, 430
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	3, 304
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	218, 422
MaeIII	GTNAC	3 cut(s)	139, 170, 292
MalI	GATC	2 cut(s)	5, 306
MboI	GATC	2 cut(s)	3, 304
MhlI	GDGCHC	2 cut(s)	102, 203
MlsI	TGGCCA	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	4 cut(s)	132, 206, 219, 424
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	3 cut(s)	135, 147, 336
MspR9I	CCNGG	3 cut(s)	147, 148, 165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NciI	CCSGG	2 cut(s)	147, 148
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	3, 304
NlaIII	CATG	4 cut(s)	25, 47, 199, 430
NlaIV	GGNNCC	4 cut(s)	110, 111, 201, 233
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	139, 170
PaeR7I	CTCGAG	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	19, 352
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	4 cut(s)	110, 111, 201, 233
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	76, 109, 199, 200
PspPPI	RGGWCCY	1 cut(s)	109
PspXI	VCTCGAGB	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	18, 351
Sau3AI	GATC	2 cut(s)	3, 304
Sau96I	GGNCC	4 cut(s)	76, 109, 199, 200
ScrFI	CCNGG	3 cut(s)	147, 148, 165
SduI	GDGCHC	2 cut(s)	102, 203
SetI	ASST	8 cut(s)	19, 29, 124, 185, 190, 211, 223, 423
SfaNI	GCATC	1 cut(s)	341
Sfr274I	CTCGAG	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	210
SmaI	CCCGGG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	2 cut(s)	218, 422
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	145, 146, 163
StyI	CCWWGG	2 cut(s)	43, 79
TaqI	TCGA	1 cut(s)	211
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	2 cut(s)	139, 170
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	139, 170
TspDTI	ATGAA	2 cut(s)	258, 294
TspMI	CCCGGG	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	210
XmaI	CCCGGG	1 cut(s)	146
XspI	CTAG	2 cut(s)	218, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.