Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002313.1

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

62506 .. 64608

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002313.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgacccccacaacagccgccatgagcttcggggacggcaaccatgtcgctctgggcttgcccacttccttaatgggccttggtgtggacgcctacgagcccactcgggtcccttctctacctcctgacatcaccggcgtcaccgccggggcattaccactccctggccgtcactttcgaaggtcagttcagggccggccctggagtgctaacaccattgagggaaagcgtgtggttcgcccgttcaagaactacaccaagctcgaaaatgtgggagctgagcattactactgtagatttgagtacaaggctgctactggggcttttactcctgataagagttgctatgtgagtttcgtggtctttgcgttatgcgttgtctgttggttatgggaaatgtggtgtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

136

Amino Acids

15.02

Weight (kDa)

8.65

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	2 cut(s)	18, 144
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	2 cut(s)	90, 138
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	85, 164
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	163, 200
AluBI	AGCT	3 cut(s)	27, 262, 278
AluI	AGCT	3 cut(s)	27, 262, 278
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	4 cut(s)	76, 166, 193, 197
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	4 cut(s)	76, 109, 193, 198
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	124, 133
AsuII	TTCGAA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	298
BceAI	ACGGC	2 cut(s)	52, 153
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	165, 202
BcnI	CCSGG	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	2 cut(s)	18, 312
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	2 cut(s)	19, 313
Bme1390I	CCNGG	3 cut(s)	148, 165, 202
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	4 cut(s)	76, 109, 193, 198
BmiI	GGNNCC	2 cut(s)	110, 111
BmrFI	CCNGG	3 cut(s)	148, 165, 202
BmrI	ACTGGG	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	223
Bpu1102I	GCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	2 cut(s)	90, 138
BsaJI	CCNNGG	4 cut(s)	79, 147, 163, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 164
Bse118I	RCCGGY	2 cut(s)	134, 195
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	165, 202
BseDI	CCNNGG	4 cut(s)	79, 147, 163, 200
BseLI	CCNNNNNNNGG	2 cut(s)	85, 164
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	4 cut(s)	78, 168, 195, 199
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	135, 147, 196
BslFI	GGGAC	2 cut(s)	47, 95
BslI	CCNNNNNNNGG	2 cut(s)	85, 164
BsmFI	GGGAC	2 cut(s)	47, 95
BsnI	GGCC	4 cut(s)	78, 168, 195, 199
BsoBI	CYCGRG	1 cut(s)	105
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	18, 144
BspANI	GGCC	4 cut(s)	78, 168, 195, 199
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	110, 111
BspT104I	TTCGAA	1 cut(s)	178
BsrFI	RCCGGY	2 cut(s)	134, 195
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	2 cut(s)	134, 195
BssECI	CCNNGG	4 cut(s)	79, 147, 163, 200
BssNI	GRCGYC	2 cut(s)	90, 138
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	165, 202
Bst4CI	ACNGT	1 cut(s)	293
BstACI	GRCGYC	2 cut(s)	90, 138
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	59, 197
BstDEI	CTNAG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	165, 202
BstSCI	CCNGG	3 cut(s)	146, 163, 200
BstSFI	CTRYAG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	4 cut(s)	78, 168, 195, 199
Cac8I	GCNNGC	2 cut(s)	59, 197
Cfr10I	RCCGGY	2 cut(s)	134, 195
Cfr13I	GGNCC	4 cut(s)	76, 109, 193, 198
CseI	GACGC	2 cut(s)	98, 127
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	2 cut(s)	22, 44
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	163, 200
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	25, 47
FaiI	YATR	5 cut(s)	23, 45, 348, 373, 391
FaqI	GGGAC	2 cut(s)	47, 95
FatI	CATG	2 cut(s)	21, 43
Fnu4HI	GCNGC	2 cut(s)	18, 312
FriOI	GRGCYC	1 cut(s)	102
FseI	GGCCGGCC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	18, 312
GluI	GCNGC	2 cut(s)	18, 312
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	78, 168, 195, 199
HapII	CCGG	3 cut(s)	135, 147, 196
HgaI	GACGC	2 cut(s)	98, 127
Hin1I	GRCGYC	2 cut(s)	90, 138
Hin1II	CATG	2 cut(s)	25, 47
HpaII	CCGG	3 cut(s)	135, 147, 196
HphI	GGTGA	2 cut(s)	124, 133
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	125, 247, 332
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	123, 174
HpyCH4III	ACNGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	279
Hsp92I	GRCGYC	2 cut(s)	90, 138
Hsp92II	CATG	2 cut(s)	25, 47
KflI	GGGWCCC	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	139, 170
MhlI	GDGCHC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	132, 214
MroNI	GCCGGC	1 cut(s)	195
MseI	TTAA	1 cut(s)	71
MspI	CCGG	3 cut(s)	135, 147, 196
MspR9I	CCNGG	3 cut(s)	148, 165, 202
MvaI	CCWGG	2 cut(s)	165, 202
MwoI	GCNNNNNNNGC	1 cut(s)	320
NaeI	GCCGGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	148
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	25, 47
NlaIV	GGNNCC	2 cut(s)	110, 111
NmuCI	GTSAC	2 cut(s)	139, 170
NspV	TTCGAA	1 cut(s)	178
PdiI	GCCGGC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	19, 313
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	163, 200
PspGI	CCWGG	2 cut(s)	163, 200
PspN4I	GGNNCC	2 cut(s)	110, 111
PspPI	GGNCC	4 cut(s)	76, 109, 193, 198
PspPPI	RGGWCCY	1 cut(s)	109
RigI	GGCCGGCC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	18, 312
Sau96I	GGNCC	4 cut(s)	76, 109, 193, 198
ScrFI	CCNGG	3 cut(s)	148, 165, 202
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	5 cut(s)	29, 124, 185, 264, 280
SfcI	CTRYAG	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	178
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	2 cut(s)	18, 144
StyD4I	CCNGG	3 cut(s)	146, 163, 200
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	178, 264
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	2 cut(s)	139, 170
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	2 cut(s)	139, 170
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.