Rroxscaffold_3G00219570

BAH and coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
1666053 .. 1666698
646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219570.1

Sequence Viewer

Length: 357 bp
ATGGATGTAAGGGATGAAAGCGATCGACGGCTTGGGAGTGATGACCGGCACTTCCCAGTTCGGAAAACCCAAAACTGGGTGAATATCTTGTCTGATCACTATGATGTTCAGAGAGCTAACACCATTGAGGGAAAGCGTGTGGTTCACTCGTTCAAGAACTACACCAAGCTCGAAAATATGGGAGCTGAGCATTACTACTGTAGATTTGAGTACAAGGCTGCTACTGGGGCTTTTACTCCTGATAAGAGTTGCTCTGTGAGTTTCGTGGTCTTTGCGTTACGCGTTGTCTGTTGGTATTGCAAGTCTGAGATGCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.95

Weight (kDa)

6.06

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 282
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 75, 76
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 3 cut(s) 116, 169, 185
AluI AGCT 3 cut(s) 116, 169, 185
ApeKI GCWGC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 91
BbvI GCAGC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 44
BclI TGATCA 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 220
BmrI ACTGGG 3 cut(s) 50, 85, 234
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 3 cut(s) 50, 85, 234
Bpu1102I GCTNAGC 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 76
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 4 cut(s) 56, 80, 229, 356
BseGI GGATG 3 cut(s) 10, 19, 322
BseLI CCNNNNNNNGG 2 cut(s) 75, 76
BseMII CTCAG 2 cut(s) 177, 297
BseNI ACTGG 4 cut(s) 56, 80, 229, 356
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 46, 314
BslI CCNNNNNNNGG 2 cut(s) 75, 76
Bsp143I GATC 2 cut(s) 22, 94
Bsp1720I GCTNAGC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 178, 298
BspFNI CGCG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 4 cut(s) 56, 80, 229, 356
BssAI RCCGGY 1 cut(s) 45
BssMI GATC 2 cut(s) 22, 94
Bst4CI ACNGT 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 186, 306
BstF5I GGATG 3 cut(s) 10, 19, 322
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 2 cut(s) 25, 97
BstMBI GATC 2 cut(s) 22, 94
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 199
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 205
BtsCI GGATG 3 cut(s) 10, 19, 322
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 45
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 325
CviJI RGCY 6 cut(s) 31, 116, 169, 185, 218, 230
CviKI_1 RGCY 6 cut(s) 31, 116, 169, 185, 218, 230
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 186, 306
DpnI GATC 2 cut(s) 24, 96
DpnII GATC 2 cut(s) 22, 94
FaeI CATG 1 cut(s) 328
FaiI YATR 3 cut(s) 102, 179, 326
FatI CATG 1 cut(s) 324
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 17, 26, 329
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HapII CCGG 2 cut(s) 46, 314
Hin1II CATG 1 cut(s) 328
HpaII CCGG 2 cut(s) 46, 314
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 63, 94, 111, 307
Hpy188III TCNNGA 2 cut(s) 154, 239
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 300, 331, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 186, 306
Hsp92II CATG 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 22, 94
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 59, 61, 69, 210, 252, 327, 337
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 24, 96
MboI GATC 2 cut(s) 22, 94
MluI ACGCGT 1 cut(s) 280
MnlI CCTC 3 cut(s) 121, 331, 332
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 2 cut(s) 46, 314
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 22, 94
NlaIII CATG 1 cut(s) 328
PkrI GCNGC 1 cut(s) 220
Ple19I CGATCG 1 cut(s) 25
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 22, 94
SetI ASST 4 cut(s) 118, 171, 187, 324
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 25, 171
TatI WGTACW 1 cut(s) 210
TscAI CASTG 1 cut(s) 338
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.