Rh2AG144700

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000878
Physical Location & Seq
Forward (+)
13217572 .. 13218535
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG144700.1

Sequence Viewer

Length: 552 bp
ATGCCAGGACTGGGATCACTGGTGAAGAACCAGCGTCTAGTAAACGCGGTTGTCCAAAGGTTTCAGAGATGCATGACCACCACAACAGCCGTCATGAGCTTCGGGGACGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACCCGGGTCCCTTCTCTACCTCCTGACATCACCAGCGTCACCGCCGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGCCAGCTCTGGGCTTGGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGAGATTCGTGGAATGAACCAAGGAGAGTAACGGGATTGGATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCCGCAGTCATTGGAGATGATGGTTCTTTGTGGGTTTGGGGAAAGTCAAAGCGTGGCCAGCTTGGTCTGGGAGAGCAAGTCATGGAGGCTGTGGTTCCTTCCCGAGTTGAAGCACTTGCTGGAGAAAAAATAACTAAGGTGCGCTCTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

183

Amino Acids

19.43

Weight (kDa)

7.82

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 31 - 180 3.3e-30 RCC1-like domain
RCC1 PF00415 33 - 81 8.2e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 68 - 93 3.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 84 - 135 1.4e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 139 - 179 9.8e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 47
AciI CCGC 3 cut(s) 47, 216, 399
AclWI GGATC 2 cut(s) 22, 363
AcoI YGGCCR 3 cut(s) 237, 295, 451
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 4 cut(s) 11, 157, 235, 262
AgsI TTSAA 1 cut(s) 506
AjnI CCWGG 2 cut(s) 4, 234
AluBI AGCT 4 cut(s) 99, 259, 292, 457
AluI AGCT 4 cut(s) 99, 259, 292, 457
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 22, 363
Ama87I CYCGRG 3 cut(s) 177, 281, 498
AoxI GGCC 7 cut(s) 148, 237, 253, 271, 285, 295, 451
AspLEI GCGC 2 cut(s) 122, 540
AspS9I GGNCC 5 cut(s) 148, 181, 271, 286, 305
AsuC2I CCSGG 3 cut(s) 178, 179, 220
AsuHPI GGTGA 3 cut(s) 34, 196, 205
AvaI CYCGRG 3 cut(s) 177, 281, 498
AvaII GGWCC 2 cut(s) 181, 305
BalI TGGCCA 1 cut(s) 453
BanII GRGCYC 1 cut(s) 174
BccI CCATC 1 cut(s) 410
BceAI ACGGC 4 cut(s) 74, 124, 224, 282
BciT130I CCWGG 2 cut(s) 6, 236
BcnI CCSGG 3 cut(s) 178, 179, 220
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 123
Bme1390I CCNGG 5 cut(s) 6, 178, 179, 220, 236
Bme18I GGWCC 2 cut(s) 181, 305
BmeT110I CYCGRG 3 cut(s) 177, 281, 498
BmgT120I GGNCC 5 cut(s) 148, 181, 271, 286, 305
BmiI GGNNCC 4 cut(s) 182, 183, 272, 492
BmrFI CCNGG 5 cut(s) 6, 178, 179, 220, 236
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 59, 392
BmuI ACTGGG 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 3 cut(s) 178, 179, 220
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 6 cut(s) 115, 151, 177, 234, 298, 335
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 157, 235, 262
Bse1I ACTGG 2 cut(s) 15, 24
BseBI CCWGG 2 cut(s) 6, 236
BseDI CCNNGG 6 cut(s) 115, 151, 177, 234, 298, 335
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 4 cut(s) 11, 157, 235, 262
BseNI ACTGG 2 cut(s) 15, 24
BseX3I CGGCCG 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 7 cut(s) 150, 239, 255, 273, 287, 297, 453
BsiEI CGRYCG 1 cut(s) 298
BsiHKCI CYCGRG 3 cut(s) 177, 281, 498
BsiSI CCGG 3 cut(s) 178, 219, 387
BslFI GGGAC 2 cut(s) 119, 167
BslI CCNNNNNNNGG 4 cut(s) 11, 157, 235, 262
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 119, 167
BsnI GGCC 7 cut(s) 150, 239, 255, 273, 287, 297, 453
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 3 cut(s) 177, 281, 498
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 14, 355
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 3 cut(s) 47, 216, 399
BspANI GGCC 7 cut(s) 150, 239, 255, 273, 287, 297, 453
BspFNI CGCG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 4 cut(s) 182, 183, 272, 492
BspPI GGATC 2 cut(s) 22, 363
BspTNI GGTCTC 1 cut(s) 270
BsrI ACTGG 2 cut(s) 15, 24
BssECI CCNNGG 6 cut(s) 115, 151, 177, 234, 298, 335
BssMI GATC 2 cut(s) 14, 355
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 115, 151, 335
Bst2UI CCWGG 2 cut(s) 6, 236
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 131, 257, 455
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 2 cut(s) 115, 298
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 540
BstKTI GATC 2 cut(s) 17, 358
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 14, 355
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 117, 126, 454
BstNI CCWGG 2 cut(s) 6, 236
BstSCI CCNGG 5 cut(s) 4, 176, 177, 218, 234
BstUI CGCG 1 cut(s) 47
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 7 cut(s) 150, 239, 255, 273, 287, 297, 453
BtgI CCRYGG 2 cut(s) 115, 298
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 131, 257, 455
CciI TCATGA 1 cut(s) 93
CfoI GCGC 2 cut(s) 122, 540
Cfr13I GGNCC 5 cut(s) 148, 181, 271, 286, 305
Cfr9I CCCGGG 1 cut(s) 177
CseI GACGC 3 cut(s) 23, 170, 199
CviAII CATG 4 cut(s) 73, 94, 116, 478
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 16, 357
DpnII GATC 2 cut(s) 14, 355
EaeI YGGCCR 3 cut(s) 237, 295, 451
EagI CGGCCG 1 cut(s) 295
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 3 cut(s) 115, 151, 335
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 181, 305
Eco52I CGGCCG 1 cut(s) 295
Eco88I CYCGRG 3 cut(s) 177, 281, 498
EcoO109I RGGNCCY 2 cut(s) 181, 305
EcoRII CCWGG 2 cut(s) 4, 234
EcoT14I CCWWGG 3 cut(s) 115, 151, 335
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 3 cut(s) 115, 151, 335
FaeI CATG 4 cut(s) 76, 97, 119, 481
FaiI YATR 5 cut(s) 74, 95, 117, 479, 546
FaqI GGGAC 2 cut(s) 119, 167
FatI CATG 4 cut(s) 72, 93, 115, 477
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 174
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 121, 539
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 7 cut(s) 150, 239, 255, 273, 287, 297, 453
HapII CCGG 3 cut(s) 178, 219, 387
HgaI GACGC 3 cut(s) 23, 170, 199
HhaI GCGC 2 cut(s) 122, 540
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 76, 97, 119, 481
Hin6I GCGC 2 cut(s) 120, 538
HinP1I GCGC 2 cut(s) 120, 538
HinfI GANTC 1 cut(s) 320
HpaII CCGG 3 cut(s) 178, 219, 387
HphI GGTGA 3 cut(s) 34, 196, 205
Hpy166II GTNNAC 2 cut(s) 43, 160
Hpy188I TCNGA 3 cut(s) 66, 250, 315
Hpy188III TCNNGA 3 cut(s) 94, 197, 498
Hpy8I GTNNAC 2 cut(s) 43, 160
HpyAV CCTTC 4 cut(s) 195, 245, 318, 504
HpyCH4V TGCA 3 cut(s) 72, 377, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 126, 454
HpyF3I CTNAG 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 76, 97, 119, 481
HspAI GCGC 2 cut(s) 120, 538
KflI GGGWCCC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 14, 355
LweI GCATC 2 cut(s) 59, 392
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 211, 241, 343
MalI GATC 2 cut(s) 16, 357
MboI GATC 2 cut(s) 14, 355
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 453
MluNI TGGCCA 1 cut(s) 453
MnlI CCTC 5 cut(s) 204, 277, 290, 296, 475
Mox20I TGGCCA 1 cut(s) 453
Mph1103I ATGCAT 1 cut(s) 74
MscI TGGCCA 1 cut(s) 453
MseI TTAA 2 cut(s) 143, 550
Msp20I TGGCCA 1 cut(s) 453
MspI CCGG 3 cut(s) 178, 219, 387
MspR9I CCNGG 5 cut(s) 6, 178, 179, 220, 236
MvaI CCWGG 2 cut(s) 6, 236
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 117, 126, 454
NciI CCSGG 3 cut(s) 178, 179, 220
NcoI CCATGG 1 cut(s) 115
NdeII GATC 2 cut(s) 14, 355
NlaIII CATG 4 cut(s) 76, 97, 119, 481
NlaIV GGNNCC 4 cut(s) 182, 183, 272, 492
NmeAIII GCCGAG 2 cut(s) 273, 299
NmuCI GTSAC 2 cut(s) 211, 241
NsiI ATGCAT 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 93
PfeI GAWTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 235
PpuMI RGGWCCY 2 cut(s) 181, 305
Psp5II RGGWCCY 2 cut(s) 181, 305
Psp6I CCWGG 2 cut(s) 4, 234
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 2 cut(s) 4, 234
PspN4I GGNNCC 4 cut(s) 182, 183, 272, 492
PspPI GGNCC 5 cut(s) 148, 181, 271, 286, 305
PspPPI RGGWCCY 2 cut(s) 181, 305
PspXI VCTCGAGB 1 cut(s) 281
SaqAI TTAA 2 cut(s) 143, 550
Sau3AI GATC 2 cut(s) 14, 355
Sau96I GGNCC 5 cut(s) 148, 181, 271, 286, 305
ScrFI CCNGG 5 cut(s) 6, 178, 179, 220, 236
SduI GDGCHC 1 cut(s) 174
SetI ASST 9 cut(s) 62, 101, 196, 261, 282, 294, 307, 459, 537
SfaNI GCATC 2 cut(s) 59, 392
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 2 cut(s) 181, 305
SlaI CTCGAG 1 cut(s) 281
SmaI CCCGGG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SsiI CCGC 3 cut(s) 47, 216, 399
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 5 cut(s) 4, 176, 177, 218, 234
StyI CCWWGG 3 cut(s) 115, 151, 335
TaqI TCGA 1 cut(s) 282
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 143, 550
Tru9I TTAA 2 cut(s) 143, 550
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 2 cut(s) 211, 241
Tsp45I GTSAC 2 cut(s) 211, 241
TspDTI ATGAA 1 cut(s) 345
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 181, 305
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 296
XhoI CTCGAG 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 177
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.