Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519839.1

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

3790 .. 5652

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519839.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgggccttggtgtggacgcctacgagcccacccgggtcccttctctgcctcctgacatcaccagcgtcaccgccgggcattaccactccctggccgtcacttccgaaggccagctctgggcttggggccgagacctcgaggcccagctcggccgtggaggtccttctcccagagatttgtggaatgaaccaaggagagtaacaggattggatcaagtaaatgtttgttctgcatttgcatccggtgtcatttctgcagccattggagatgatggttctttgtgggtttgggggaagtcaaagcgtggccagcttggtctgggagagcaggtcatggaggctgtggttccttcccgagttgaagcacttgctggtgaaaaaataactaaggttgcacttggttgggggcatgctcttgcattgactgaggatggaaagttatttggttggggttattttgctgatggtaggttaggaagcattaaagaatctttggagacatctcaactggaatatacttccaataatcaagaactgtcgagttcatctttggaagctgccgagaagctggttttagaaggaatggccaaggagaataacatgccaatagtttgggaacccagtttagtgagggaactacagtgtattgaagttgtagacattgcatgtggtcttgatcattcattaattctttgtggtgatgggacgctactgagctgtgggagcaatgtatatggtcagttgggaagagaaaaacaggatgtaggattgtttcctgttgatataagcttccgtccaatgtctatagcagccgggcttggccactctttggcaatttgccaggttccatcatcagatgttataggaggagccgcaggtgtcattacatggggttggaatcagacctctcagctcggtagggatgggccagaaaatattccattaggagttgaaggcttggaaggggaaactcctgtatcagtagcaggaggtcgtgtgcattccattgctctaacatcagagagagaagtgtgggtttggggtagtggtaagaatggaaggcttgggttaggaagctcctgtgatgaacctgaaccaattttgctggactctgtagagggttgtgatgttttacaagctgtgtcagggtttgatcataatcttctcttaattgccgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

393

Amino Acids

41.55

Weight (kDa)

4.58

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	866
AbsI	CCTCGAGG	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	319, 866
AccB7I	CCANNNNNTGG	2 cut(s)	91, 829
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	2 cut(s)	72, 873
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	5 cut(s)	93, 151, 307, 585, 820
AcyI	GRCGYC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	13, 91, 118, 829
AgsI	TTSAA	3 cut(s)	362, 650, 953
AjnI	CCWGG	2 cut(s)	90, 840
Alw26I	GTCTC	2 cut(s)	126, 491
AlwI	GGATC	1 cut(s)	219
Ama87I	CYCGRG	3 cut(s)	33, 137, 354
ApeKI	GCWGC	3 cut(s)	257, 557, 809
AseI	ATTAAT	1 cut(s)	686
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	6 cut(s)	4, 37, 127, 142, 161, 926
AsuC2I	CCSGG	4 cut(s)	34, 35, 76, 814
AsuHPI	GGTGA	4 cut(s)	52, 61, 386, 710
AvaI	CYCGRG	3 cut(s)	33, 137, 354
AvaII	GGWCC	2 cut(s)	37, 161
BaeI	ACNNNNGTAYC	2 cut(s)	960, 993
BalI	TGGCCA	3 cut(s)	309, 587, 822
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	269, 544, 821
BccI	CCATC	6 cut(s)	266, 425, 458, 695, 856, 917
BceAI	ACGGC	2 cut(s)	80, 138
BciT130I	CCWGG	2 cut(s)	92, 842
BclI	TGATCA	2 cut(s)	676, 1153
BcnI	CCSGG	4 cut(s)	34, 35, 76, 814
BcoDI	GTCTC	2 cut(s)	126, 491
BfmI	CTRYAG	4 cut(s)	255, 638, 804, 1113
BfuAI	ACCTGC	2 cut(s)	319, 866
BisI	GCNGC	4 cut(s)	258, 558, 810, 873
BlsI	GCNGC	4 cut(s)	259, 559, 811, 874
Bme1390I	CCNGG	6 cut(s)	34, 35, 76, 92, 814, 842
Bme18I	GGWCC	2 cut(s)	37, 161
BmeT110I	CYCGRG	3 cut(s)	33, 137, 354
BmgT120I	GGNCC	6 cut(s)	4, 37, 127, 142, 161, 926
BmiI	GGNNCC	7 cut(s)	38, 39, 128, 348, 618, 846, 871
BmrFI	CCNGG	6 cut(s)	34, 35, 76, 92, 814, 842
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	615
BpuMI	CCSGG	4 cut(s)	34, 35, 76, 814
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	6 cut(s)	7, 33, 90, 154, 191, 588
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 981, 1011
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 91, 118, 829
Bse1I	ACTGG	2 cut(s)	513, 621
Bse3DI	GCAATG	3 cut(s)	660, 733, 1005
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	2 cut(s)	92, 842
BseDI	CCNNGG	6 cut(s)	7, 33, 90, 154, 191, 588
BseGI	GGATG	4 cut(s)	239, 436, 766, 928
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	4 cut(s)	13, 91, 118, 829
BseMI	GCAATG	3 cut(s)	660, 733, 1005
BseMII	CTCAG	3 cut(s)	417, 704, 923
BseNI	ACTGG	2 cut(s)	513, 621
BseRI	GAGGAG	1 cut(s)	882
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	269, 544, 821
BseYI	CCCAGC	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	3 cut(s)	33, 137, 354
BsiSI	CCGG	4 cut(s)	34, 75, 243, 813
BslFI	GGGAC	2 cut(s)	23, 718
BslI	CCNNNNNNNGG	4 cut(s)	13, 91, 118, 829
BsmAI	GTCTC	2 cut(s)	126, 491
BsmFI	GGGAC	2 cut(s)	23, 718
BsmI	GAATGC	1 cut(s)	1000
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	3 cut(s)	33, 137, 354
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	211, 676, 1153
BspACI	CCGC	2 cut(s)	72, 873
BspCNI	CTCAG	3 cut(s)	418, 705, 922
BspLI	GGNNCC	7 cut(s)	38, 39, 128, 348, 618, 846, 871
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	2 cut(s)	319, 866
BspPI	GGATC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	3 cut(s)	660, 733, 1005
BsrI	ACTGG	2 cut(s)	513, 621
BssECI	CCNNGG	6 cut(s)	7, 33, 90, 154, 191, 588
BssMI	GATC	3 cut(s)	211, 676, 1153
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	3 cut(s)	7, 191, 588
Bst2UI	CCWGG	2 cut(s)	92, 842
Bst4CI	ACNGT	2 cut(s)	537, 642
Bst6I	CTCTTC	1 cut(s)	742
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	113, 311, 411
BstDEI	CTNAG	4 cut(s)	387, 426, 713, 909
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	4 cut(s)	239, 436, 766, 928
BstKTI	GATC	3 cut(s)	214, 679, 1156
BstMAI	GTCTC	2 cut(s)	126, 491
BstMBI	GATC	3 cut(s)	211, 676, 1153
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 723
BstNI	CCWGG	2 cut(s)	92, 842
BstNSI	RCATGY	3 cut(s)	413, 604, 669
BstSCI	CCNGG	6 cut(s)	32, 33, 74, 90, 812, 840
BstSFI	CTRYAG	4 cut(s)	255, 638, 804, 1113
BstV1I	GCAGC	3 cut(s)	269, 544, 821
BstXI	CCANNNNNNTGG	1 cut(s)	612
BstZI	CGGCCG	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	239, 436, 766, 928
BtsIMutI	CAGTG	1 cut(s)	647
BveI	ACCTGC	2 cut(s)	319, 866
Cac8I	GCNNGC	3 cut(s)	113, 311, 411
Cfr13I	GGNCC	6 cut(s)	4, 37, 127, 142, 161, 926
Cfr9I	CCCGGG	1 cut(s)	33
CseI	GACGC	3 cut(s)	26, 55, 715
CviAII	CATG	5 cut(s)	334, 410, 601, 666, 888
DdeI	CTNAG	4 cut(s)	387, 426, 713, 909
DpnI	GATC	3 cut(s)	213, 678, 1155
DpnII	GATC	3 cut(s)	211, 676, 1153
EaeI	YGGCCR	5 cut(s)	93, 151, 307, 585, 820
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	3 cut(s)	7, 191, 588
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	37, 161
Eco52I	CGGCCG	1 cut(s)	151
Eco88I	CYCGRG	3 cut(s)	33, 137, 354
EcoO109I	RGGNCCY	2 cut(s)	37, 161
EcoRII	CCWGG	2 cut(s)	90, 840
EcoT14I	CCWWGG	3 cut(s)	7, 191, 588
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	3 cut(s)	7, 191, 588
FaeI	CATG	5 cut(s)	337, 413, 604, 669, 891
FaqI	GGGAC	2 cut(s)	23, 718
FatI	CATG	5 cut(s)	333, 409, 600, 665, 887
FbaI	TGATCA	2 cut(s)	676, 1153
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	4 cut(s)	258, 558, 810, 873
FokI	GGATG	4 cut(s)	226, 443, 773, 935
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	4 cut(s)	258, 558, 810, 873
GluI	GCNGC	4 cut(s)	258, 558, 810, 873
GsaI	CCCAGC	1 cut(s)	148
HapII	CCGG	4 cut(s)	34, 75, 243, 813
HgaI	GACGC	3 cut(s)	26, 55, 715
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	337, 413, 604, 669, 891
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	3 cut(s)	488, 898, 1109
HpaII	CCGG	4 cut(s)	34, 75, 243, 813
HphI	GGTGA	4 cut(s)	52, 61, 386, 710
Hpy166II	GTNNAC	2 cut(s)	16, 658
Hpy188I	TCNGA	4 cut(s)	106, 856, 903, 1021
Hpy188III	TCNNGA	4 cut(s)	53, 354, 530, 674
Hpy8I	GTNNAC	2 cut(s)	16, 658
HpyAV	CCTTC	8 cut(s)	51, 101, 174, 360, 572, 947, 956, 1053
HpyCH4III	ACNGT	2 cut(s)	537, 642
HpyCH4V	TGCA	7 cut(s)	233, 239, 257, 395, 419, 665, 1000
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 723
HpyF3I	CTNAG	4 cut(s)	387, 426, 713, 909
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	337, 413, 604, 669, 891
KflI	GGGWCCC	1 cut(s)	37
Ksp22I	TGATCA	2 cut(s)	676, 1153
Kzo9I	GATC	3 cut(s)	211, 676, 1153
LmnI	GCTCC	3 cut(s)	723, 869, 1082
Lsp1109I	GCAGC	3 cut(s)	269, 544, 821
LweI	GCATC	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	67, 97, 199
MalI	GATC	3 cut(s)	213, 678, 1155
MboI	GATC	3 cut(s)	211, 676, 1153
MboII	GAAGA	2 cut(s)	759, 1154
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	3 cut(s)	309, 587, 822
MluCI	AATT	4 cut(s)	687, 834, 1098, 1170
MluNI	TGGCCA	3 cut(s)	309, 587, 822
MlyI	GAGTC	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	875
Mox20I	TGGCCA	3 cut(s)	309, 587, 822
MroXI	GAANNNNTTC	1 cut(s)	936
MscI	TGGCCA	3 cut(s)	309, 587, 822
MseI	TTAA	3 cut(s)	483, 686, 1169
Msp20I	TGGCCA	3 cut(s)	309, 587, 822
MspI	CCGG	4 cut(s)	34, 75, 243, 813
MspR9I	CCNGG	6 cut(s)	34, 35, 76, 92, 814, 842
Mva1269I	GAATGC	1 cut(s)	1000
MvaI	CCWGG	2 cut(s)	92, 842
MwoI	GCNNNNNNNGC	2 cut(s)	310, 723
NciI	CCSGG	4 cut(s)	34, 35, 76, 814
NdeII	GATC	3 cut(s)	211, 676, 1153
NlaIII	CATG	5 cut(s)	337, 413, 604, 669, 891
NlaIV	GGNNCC	7 cut(s)	38, 39, 128, 348, 618, 846, 871
NmeAIII	GCCGAG	3 cut(s)	129, 155, 586
NmuCI	GTSAC	2 cut(s)	67, 97
NspI	RCATGY	3 cut(s)	413, 604, 669
PaeI	GCATGC	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	866
PctI	GAATGC	1 cut(s)	1000
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	2 cut(s)	488, 898
PflMI	CCANNNNNTGG	2 cut(s)	91, 829
PkrI	GCNGC	4 cut(s)	259, 559, 811, 874
PleI	GAGTC	1 cut(s)	1103
PpsI	GAGTC	1 cut(s)	1103
PpuMI	RGGWCCY	2 cut(s)	37, 161
PshBI	ATTAAT	1 cut(s)	686
Psp5II	RGGWCCY	2 cut(s)	37, 161
Psp6I	CCWGG	2 cut(s)	90, 840
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	90, 840
PspN4I	GGNNCC	7 cut(s)	38, 39, 128, 348, 618, 846, 871
PspPI	GGNCC	6 cut(s)	4, 37, 127, 142, 161, 926
PspPPI	RGGWCCY	2 cut(s)	37, 161
PspXI	VCTCGAGB	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	483, 686, 1169
SatI	GCNGC	4 cut(s)	258, 558, 810, 873
Sau3AI	GATC	3 cut(s)	211, 676, 1153
Sau96I	GGNCC	6 cut(s)	4, 37, 127, 142, 161, 926
SchI	GAGTC	1 cut(s)	1103
ScrFI	CCNGG	6 cut(s)	34, 35, 76, 92, 814, 842
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	4 cut(s)	255, 638, 804, 1113
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	37, 161
SlaI	CTCGAG	1 cut(s)	137
SmaI	CCCGGG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	4 cut(s)	687, 834, 1098, 1170
SsiI	CCGC	2 cut(s)	72, 873
SspI	AATATT	1 cut(s)	937
StyD4I	CCNGG	6 cut(s)	32, 33, 74, 90, 812, 840
StyI	CCWWGG	3 cut(s)	7, 191, 588
TaaI	ACNGT	2 cut(s)	537, 642
TaqI	TCGA	2 cut(s)	138, 539
TasI	AATT	4 cut(s)	687, 834, 1098, 1170
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	2 cut(s)	488, 898
Tru1I	TTAA	3 cut(s)	483, 686, 1169
Tru9I	TTAA	3 cut(s)	483, 686, 1169
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	2 cut(s)	67, 97
TseI	GCWGC	3 cut(s)	257, 557, 809
Tsp45I	GTSAC	2 cut(s)	67, 97
TspDTI	ATGAA	4 cut(s)	201, 534, 672, 1101
TspGWI	ACGGA	1 cut(s)	782
TspMI	CCCGGG	1 cut(s)	33
TspRI	CASTG	1 cut(s)	647
Van91I	CCANNNNNTGG	2 cut(s)	91, 829
VpaK11BI	GGWCC	2 cut(s)	37, 161
VspI	ATTAAT	1 cut(s)	686
XceI	RCATGY	3 cut(s)	413, 604, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	137
XmaI	CCCGGG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.