Prupe.7G156600_v2.0.a1

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000878
Physical Location & Seq
Reverse (-)
16526005 .. 16528514
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G156600.2

Sequence Viewer

Length: 1341 bp
ATGCCAGGAGTGGGATCGCTGGTGAAGGGGCCTCGGGCAGTGAACGTGATCATCCAAAGGTTACAGAGATGTATGAGCAGCACAACCGGCGCTGTGATGAGCTTTGGAGACGGAAGCCATGGAGCTCTGGGTTTGCCCACTTCCCTCATGGGCCTTGGTGTGGACGCTTACGAGCCTATTCGGGTCCCTTCTCTGCCTTCTGATGTCACCAGCGTCACCGCCGGACACTACCACTCGCTTGCTGTGACTTCCCAAGGCCAGCTCTGGGCTTGGGGCCGAGACCTTGAAGCCCAGCTCGGCCGTGGTCTCCCTTCTCCCAGAGATTCATGGAATGAACCAAAGAAAGTAGCAGGGTTGGATCAAGTAAATGTTTGTGCTGCATTTGCATCTGGTGTTGTTTCTGCGGCCATTGGAGATGATGGTTCTTTGTGGGTTTGGGGAAAGTCGAAGCGTGGCCAACTTGGTCTTGGAAATCAAGTAACGGAGTCTGTGGTGCCTTCCAGAGTTGAAGCACTTGCAGGAGAGAAAATAATTAAGGTATCGTTTGGTTGGGGGCATGCTCTTGCACTGACTGAGGATGGAAAGTTGTTTGGTTGGGGTTATTCAGCTGATGGTAGGTTAGGAAGCATTACAGAATCTTTGGGGACGTCTCTACTGGAATCACGGGGAGATTTGAATAATAGGGAACTGTCAAGTTCAACACTGGAAGCTGCTGAGAAGCTGGTTTTAGAAGGGATGGCGAAGGAGAATAACATGCCAATAATTTGGGAACCTAGTTTAGTGAGAGAACTACATTCTGTTGACGTTGTAGACATTGCATGTGGTTTTGATCATTCATTAATTCTTTGTGTTTCAGGTGATGGAACACTACTAAGCTGTGGGAGCAATGTATATGGTCAGTTGGGCAGAGAAAAACAGGATTTAGGGTTGTTTCCTGTTGACATAAGCTTCCGTCCCACGTATATAGCATCAGGGCTTGGCCATTCTTTGGCGATTTGCCAGGTTCCATCATCAAATGTTATAGGAGGGGCCGAAGGCATTGTTACTTGGGGGTGGAATCAGAGCTCTCAGCTTGGAAGAGGTGGATCTGAGAATATTCCGTTGGTGATTGAAGGATTGGAAGGGGAAATTCCTGTCACAGTGTCAGGAGGGCGTGTGCATTCCATAGCTCTCACATCCAAGGGAGAAGTGTGGGTTTGGGGTTGTGGTAAGAACGGAAGGCTTGGGTTAGGAAGCTCCTGTGACGAAGCTGAACCAATATTGCTCGACTTTGTAGAGGGTTGTCAAGTTTTACAAGCAGTGTCCGGATTTGATCATAATCTCGTCCTCATTGCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

447

Amino Acids

46.77

Weight (kDa)

5.03

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 988
AccI GTMKAC 1 cut(s) 810
AccIII TCCGGA 1 cut(s) 1304
AciI CCGC 2 cut(s) 219, 404
AclWI GGATC 3 cut(s) 22, 366, 1093
AcoI YGGCCR 4 cut(s) 298, 405, 454, 979
AcsI RAATTY 1 cut(s) 1128
AcyI GRCGYC 1 cut(s) 647
AfiI CCNNNNNNNGG 4 cut(s) 11, 160, 265, 988
AgsI TTSAA 5 cut(s) 287, 509, 676, 699, 1112
AjnI CCWGG 2 cut(s) 4, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 1085, 1117
Alw21I GWGCWC 2 cut(s) 127, 1067
Alw26I GTCTC 4 cut(s) 102, 273, 311, 654
AlwI GGATC 3 cut(s) 22, 366, 1093
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 1304
AoxI GGCC 9 cut(s) 29, 151, 256, 274, 298, 405, 454, 979, 1029
ApeKI GCWGC 3 cut(s) 78, 377, 710
ApoI RAATTY 1 cut(s) 1128
AseI ATTAAT 1 cut(s) 839
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 5 cut(s) 29, 151, 184, 274, 1029
AsuHPI GGTGA 5 cut(s) 34, 199, 208, 869, 1117
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 184
BalI TGGCCA 2 cut(s) 456, 981
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 2 cut(s) 127, 1067
Bbv12I GWGCWC 2 cut(s) 127, 1067
BbvI GCAGC 3 cut(s) 90, 364, 697
BccI CCATC 6 cut(s) 413, 572, 605, 730, 854, 1015
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 6, 1001
BclI TGATCA 3 cut(s) 48, 829, 1312
BcoDI GTCTC 4 cut(s) 102, 273, 311, 654
BfaI CTAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 4 cut(s) 79, 378, 405, 711
BlsI GCNGC 4 cut(s) 80, 379, 406, 712
Bme1390I CCNGG 2 cut(s) 6, 1001
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 5 cut(s) 29, 151, 184, 274, 1029
BmiI GGNNCC 8 cut(s) 30, 185, 186, 275, 495, 771, 1005, 1030
BmrFI CCNGG 2 cut(s) 6, 1001
BmsI GCATC 2 cut(s) 395, 977
BsaAI YACGTR 1 cut(s) 960
BsaBI GATNNNNATC 1 cut(s) 1317
BsaHI GRCGYC 1 cut(s) 647
BsaI GGTCTC 2 cut(s) 273, 311
BsaJI CCNNGG 6 cut(s) 32, 118, 154, 253, 301, 1179
BsaWI WCCGGW 1 cut(s) 1304
BsaXI ACNNNNNCTCC 2 cut(s) 1140, 1170
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 160, 265, 988
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 660, 708
Bse3DI GCAATG 3 cut(s) 813, 892, 1329
Bse8I GATNNNNATC 1 cut(s) 1317
BseAI TCCGGA 1 cut(s) 1304
BseBI CCWGG 2 cut(s) 6, 1001
BseDI CCNNGG 6 cut(s) 32, 118, 154, 253, 301, 1179
BseGI GGATG 4 cut(s) 51, 583, 741, 1175
BseJI GATNNNNATC 1 cut(s) 1317
BseLI CCNNNNNNNGG 4 cut(s) 11, 160, 265, 988
BseMI GCAATG 3 cut(s) 813, 892, 1329
BseMII CTCAG 4 cut(s) 564, 705, 1080, 1082
BseNI ACTGG 2 cut(s) 660, 708
BseX3I CGGCCG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 90, 364, 697
BseYI CCCAGC 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 9 cut(s) 31, 153, 258, 276, 300, 407, 456, 981, 1031
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 127, 1067
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 3 cut(s) 87, 222, 1305
BslFI GGGAC 3 cut(s) 170, 658, 939
BslI CCNNNNNNNGG 4 cut(s) 11, 160, 265, 988
BsmAI GTCTC 4 cut(s) 102, 273, 311, 654
BsmBI CGTCTC 2 cut(s) 102, 654
BsmFI GGGAC 3 cut(s) 170, 658, 939
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 9 cut(s) 31, 153, 258, 276, 300, 407, 456, 981, 1031
Bso31I GGTCTC 2 cut(s) 273, 311
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 127, 1067
Bsp13I TCCGGA 1 cut(s) 1304
Bsp143I GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 2 cut(s) 219, 404
BspANI GGCC 9 cut(s) 31, 153, 258, 276, 300, 407, 456, 981, 1031
BspCNI CTCAG 4 cut(s) 565, 706, 1081, 1081
BspEI TCCGGA 1 cut(s) 1304
BspLI GGNNCC 8 cut(s) 30, 185, 186, 275, 495, 771, 1005, 1030
BspPI GGATC 3 cut(s) 22, 366, 1093
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 2 cut(s) 273, 311
BsrDI GCAATG 3 cut(s) 813, 892, 1329
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 660, 708
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 6 cut(s) 32, 118, 154, 253, 301, 1179
BssMI GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 4 cut(s) 118, 154, 253, 1179
Bst2UI CCWGG 2 cut(s) 6, 1001
Bst4CI ACNGT 2 cut(s) 690, 1141
Bst6I CTCTTC 1 cut(s) 1072
BstACI GRCGYC 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 960
BstC8I GCNNGC 3 cut(s) 240, 260, 558
BstDEI CTNAG 5 cut(s) 573, 714, 872, 1068, 1089
BstDSI CCRYGG 2 cut(s) 118, 301
BstF5I GGATG 4 cut(s) 51, 583, 741, 1175
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 17, 51, 361, 832, 1088, 1315
BstMAI GTCTC 4 cut(s) 102, 273, 311, 654
BstMBI GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 87, 383, 882
BstNI CCWGG 2 cut(s) 6, 1001
BstNSI RCATGY 3 cut(s) 560, 757, 822
BstSCI CCNGG 2 cut(s) 4, 999
BstV1I GCAGC 3 cut(s) 90, 364, 697
BstX2I RGATCY 1 cut(s) 1085
BstXI CCANNNNNNTGG 1 cut(s) 765
BstYI RGATCY 1 cut(s) 1085
BstZI CGGCCG 1 cut(s) 298
BsuRI GGCC 9 cut(s) 31, 153, 258, 276, 300, 407, 456, 981, 1031
BtgI CCRYGG 2 cut(s) 118, 301
BtsCI GGATG 4 cut(s) 51, 583, 741, 1175
BtsI GCAGTG 2 cut(s) 45, 1305
BtsIMutI CAGTG 5 cut(s) 45, 566, 701, 1146, 1305
Cac8I GCNNGC 3 cut(s) 240, 260, 558
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 5 cut(s) 29, 151, 184, 274, 1029
CseI GACGC 2 cut(s) 173, 202
CviAII CATG 6 cut(s) 119, 148, 327, 557, 754, 819
DdeI CTNAG 5 cut(s) 573, 714, 872, 1068, 1089
DpnI GATC 6 cut(s) 16, 50, 360, 831, 1087, 1314
DpnII GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
EaeI YGGCCR 4 cut(s) 298, 405, 454, 979
EagI CGGCCG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 1072
EarI CTCTTC 1 cut(s) 1072
Ecl136II GAGCTC 2 cut(s) 125, 1065
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 4 cut(s) 118, 154, 253, 1179
Eco24I GRGCYC 2 cut(s) 127, 1067
Eco31I GGTCTC 2 cut(s) 273, 311
Eco47I GGWCC 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 298
Eco53kI GAGCTC 2 cut(s) 125, 1065
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 2 cut(s) 125, 1065
EcoO109I RGGNCCY 2 cut(s) 29, 184
EcoRII CCWGG 2 cut(s) 4, 999
EcoT14I CCWWGG 4 cut(s) 118, 154, 253, 1179
EcoT38I GRGCYC 2 cut(s) 127, 1067
ErhI CCWWGG 4 cut(s) 118, 154, 253, 1179
Esp3I CGTCTC 2 cut(s) 102, 654
FaeI CATG 6 cut(s) 122, 151, 330, 560, 757, 822
FaqI GGGAC 3 cut(s) 170, 658, 939
FatI CATG 6 cut(s) 118, 147, 326, 556, 753, 818
FbaI TGATCA 3 cut(s) 48, 829, 1312
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 4 cut(s) 79, 378, 405, 711
FokI GGATG 4 cut(s) 38, 590, 748, 1162
FriOI GRGCYC 2 cut(s) 127, 1067
Fsp4HI GCNGC 4 cut(s) 79, 378, 405, 711
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 79, 378, 405, 711
GsaI CCCAGC 1 cut(s) 295
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 9 cut(s) 31, 153, 258, 276, 300, 407, 456, 981, 1031
HapII CCGG 3 cut(s) 87, 222, 1305
HgaI GACGC 2 cut(s) 173, 202
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 6 cut(s) 122, 151, 330, 560, 757, 822
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 2 cut(s) 802, 940
HindII GTYRAC 2 cut(s) 802, 940
HindIII AAGCTT 1 cut(s) 946
HinfI GANTC 5 cut(s) 323, 485, 635, 659, 1057
HpaII CCGG 3 cut(s) 87, 222, 1305
HphI GGTGA 5 cut(s) 34, 199, 208, 869, 1117
Hpy166II GTNNAC 5 cut(s) 43, 163, 802, 811, 940
Hpy188I TCNGA 3 cut(s) 202, 1062, 1090
Hpy188III TCNNGA 3 cut(s) 501, 1146, 1305
Hpy8I GTNNAC 5 cut(s) 43, 163, 802, 811, 940
HpyCH4III ACNGT 2 cut(s) 690, 1141
HpyCH4IV ACGT 4 cut(s) 45, 647, 804, 959
HpyCH4V TGCA 6 cut(s) 380, 386, 518, 566, 818, 1159
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 383, 882
HpyF3I CTNAG 5 cut(s) 573, 714, 872, 1068, 1089
HpySE526I ACGT 4 cut(s) 45, 647, 804, 959
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 6 cut(s) 122, 151, 330, 560, 757, 822
HspAI GCGC 1 cut(s) 90
KflI GGGWCCC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 1304
Ksp22I TGATCA 3 cut(s) 48, 829, 1312
Kzo9I GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
LmnI GCTCC 3 cut(s) 122, 882, 1241
Lsp1109I GCAGC 3 cut(s) 90, 364, 697
LweI GCATC 2 cut(s) 395, 977
MaeI CTAG 1 cut(s) 774
MaeII ACGT 4 cut(s) 45, 647, 804, 959
MaeIII GTNAC 8 cut(s) 60, 205, 214, 244, 478, 1042, 1135, 1241
MalI GATC 6 cut(s) 16, 50, 360, 831, 1087, 1314
MboI GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
MboII GAAGA 1 cut(s) 1089
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 2 cut(s) 127, 1067
MlsI TGGCCA 2 cut(s) 456, 981
MluCI AATT 4 cut(s) 531, 762, 840, 1128
MluNI TGGCCA 2 cut(s) 456, 981
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 8 cut(s) 42, 155, 568, 1019, 1073, 1142, 1270, 1337
Mox20I TGGCCA 2 cut(s) 456, 981
MroI TCCGGA 1 cut(s) 1304
MscI TGGCCA 2 cut(s) 456, 981
MseI TTAA 2 cut(s) 534, 839
Msp20I TGGCCA 2 cut(s) 456, 981
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 3 cut(s) 87, 222, 1305
MspR9I CCNGG 2 cut(s) 6, 1001
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 2 cut(s) 6, 1001
MwoI GCNNNNNNNGC 3 cut(s) 87, 383, 882
NcoI CCATGG 1 cut(s) 118
NdeII GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
NlaIII CATG 6 cut(s) 122, 151, 330, 560, 757, 822
NlaIV GGNNCC 8 cut(s) 30, 185, 186, 275, 495, 771, 1005, 1030
NmeAIII GCCGAG 2 cut(s) 276, 302
NmuCI GTSAC 5 cut(s) 205, 214, 244, 1135, 1241
NspI RCATGY 3 cut(s) 560, 757, 822
PaeI GCATGC 1 cut(s) 560
PctI GAATGC 1 cut(s) 1159
PfeI GAWTC 4 cut(s) 323, 635, 659, 1057
PflMI CCANNNNNTGG 1 cut(s) 988
PkrI GCNGC 4 cut(s) 80, 379, 406, 712
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 960
PpuMI RGGWCCY 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 839
Psp124BI GAGCTC 2 cut(s) 127, 1067
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 4, 999
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 2 cut(s) 4, 999
PspN4I GGNNCC 8 cut(s) 30, 185, 186, 275, 495, 771, 1005, 1030
PspPI GGNCC 5 cut(s) 29, 151, 184, 274, 1029
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 1 cut(s) 1085
PvuII CAGCTG 1 cut(s) 608
SacI GAGCTC 2 cut(s) 127, 1067
SaqAI TTAA 2 cut(s) 534, 839
SatI GCNGC 4 cut(s) 79, 378, 405, 711
Sau3AI GATC 6 cut(s) 14, 48, 358, 829, 1085, 1312
Sau96I GGNCC 5 cut(s) 29, 151, 184, 274, 1029
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 6, 1001
SduI GDGCHC 2 cut(s) 127, 1067
SfaNI GCATC 2 cut(s) 395, 977
SinI GGWCC 1 cut(s) 184
SphI GCATGC 1 cut(s) 560
Sse9I AATT 4 cut(s) 531, 762, 840, 1128
SsiI CCGC 2 cut(s) 219, 404
SspI AATATT 2 cut(s) 1096, 1260
SspMI CTAG 1 cut(s) 774
SstI GAGCTC 2 cut(s) 127, 1067
StyD4I CCNGG 2 cut(s) 4, 999
StyI CCWWGG 4 cut(s) 118, 154, 253, 1179
TaaI ACNGT 2 cut(s) 690, 1141
TaiI ACGT 4 cut(s) 48, 650, 807, 962
TaqI TCGA 2 cut(s) 446, 1266
TasI AATT 4 cut(s) 531, 762, 840, 1128
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 4 cut(s) 323, 635, 659, 1057
Tru1I TTAA 2 cut(s) 534, 839
Tru9I TTAA 2 cut(s) 534, 839
TscAI CASTG 5 cut(s) 45, 573, 708, 1146, 1305
TseFI GTSAC 5 cut(s) 205, 214, 244, 1135, 1241
TseI GCWGC 3 cut(s) 78, 377, 710
Tsp45I GTSAC 5 cut(s) 205, 214, 244, 1135, 1241
TspDTI ATGAA 3 cut(s) 315, 348, 825
TspGWI ACGGA 5 cut(s) 126, 497, 941, 1089, 1230
TspRI CASTG 5 cut(s) 45, 573, 708, 1146, 1305
Van91I CCANNNNNTGG 1 cut(s) 988
VpaK11BI GGWCC 1 cut(s) 184
VspI ATTAAT 1 cut(s) 839
XapI RAATTY 1 cut(s) 1128
XceI RCATGY 3 cut(s) 560, 757, 822
XcmI CCANNNNNNNNNTGG 3 cut(s) 145, 299, 464
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 1 cut(s) 774
ZraI GACGTC 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.