Rw7G041810

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000878
Physical Location & Seq
Forward (+)
65382587 .. 65383963
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041810.1

Sequence Viewer

Length: 372 bp
ATGTCTGATCACTATGATGTTCAGAGTGCTAACACCATTGAGGGAAAACGTGTGGTTCACTCGGTCAAGAACTACACCAAGCTCGAAAATGTGGGAGCTGAGCATTACTACTGTAGATTTGAGTACAAGGTTGCTACTGGGGCTTTTACTCCTGATAGATCTGAGATGCCGTATAACCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTTTCATCCTGCAAGCGTGAACATCTCAAATGAAGTAGCCAAAAACTTGGTCTATGGAGTTGTTAACATTTATAGAAGGCAGCATTTTGTTAATTATCCGGGGAGTCTTTGCATGAATGGATTGTTTGTGGACCCTAAGCACCGAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

123

Amino Acids

14.28

Weight (kDa)

7.0

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 49
AluBI AGCT 2 cut(s) 82, 98
AluI AGCT 2 cut(s) 82, 98
ApeKI GCWGC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 2 cut(s) 179, 318
AvaII GGWCC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 154
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 2 cut(s) 179, 318
BfmI CTRYAG 1 cut(s) 112
BglII AGATCT 1 cut(s) 158
BisI GCNGC 1 cut(s) 299
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 300
Bme1390I CCNGG 2 cut(s) 179, 318
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 179, 318
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 99
BpuMI CCSGG 2 cut(s) 179, 318
BsaJI CCNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 142, 221
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 187, 223
BseMII CTCAG 2 cut(s) 90, 153
BseNI ACTGG 2 cut(s) 142, 221
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 179, 317
Bsp143I GATC 2 cut(s) 7, 158
Bsp1720I GCTNAGC 1 cut(s) 99
BspCNI CTCAG 2 cut(s) 91, 154
BspLI GGNNCC 1 cut(s) 351
BsrI ACTGG 2 cut(s) 142, 221
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 2 cut(s) 7, 158
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 99, 162, 354
BstF5I GGATG 2 cut(s) 187, 223
BstKTI GATC 2 cut(s) 10, 161
BstMBI GATC 2 cut(s) 7, 158
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 177, 316
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 2 cut(s) 187, 223
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 190, 331
CviJI RGCY 4 cut(s) 82, 98, 143, 257
CviKI_1 RGCY 4 cut(s) 82, 98, 143, 257
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 99, 162, 354
DpnI GATC 2 cut(s) 9, 160
DpnII GATC 2 cut(s) 7, 158
Eco47I GGWCC 1 cut(s) 349
FaeI CATG 2 cut(s) 193, 334
FaiI YATR 6 cut(s) 15, 174, 191, 273, 291, 332
FatI CATG 2 cut(s) 189, 330
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 2 cut(s) 194, 210
Fsp4HI GCNGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 299
HapII CCGG 2 cut(s) 179, 317
Hin1II CATG 2 cut(s) 193, 334
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 322
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 2 cut(s) 179, 317
Hpy166II GTNNAC 4 cut(s) 58, 238, 283, 349
Hpy188I TCNGA 3 cut(s) 7, 24, 163
Hpy188III TCNNGA 2 cut(s) 67, 152
Hpy8I GTNNAC 4 cut(s) 58, 238, 283, 349
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 196, 210, 230, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 99, 162, 354
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 193, 334
Ksp22I TGATCA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 2 cut(s) 7, 158
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 6 cut(s) 123, 165, 192, 202, 240, 330
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 156
MaeII ACGT 1 cut(s) 49
MalI GATC 2 cut(s) 9, 160
MboI GATC 2 cut(s) 7, 158
MflI RGATCY 1 cut(s) 158
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 3 cut(s) 34, 196, 197
MseI TTAA 2 cut(s) 282, 309
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 179, 317
MspR9I CCNGG 2 cut(s) 179, 318
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 2 cut(s) 179, 318
NdeII GATC 2 cut(s) 7, 158
NlaIII CATG 2 cut(s) 193, 334
NlaIV GGNNCC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 300
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 349
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 282, 309
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 2 cut(s) 7, 158
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 179, 318
SetI ASST 5 cut(s) 52, 84, 100, 132, 189
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 177, 316
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 52
TasI AATT 1 cut(s) 310
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 2 cut(s) 282, 309
Tru9I TTAA 2 cut(s) 282, 309
TscAI CASTG 1 cut(s) 203
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 212, 264, 347
TspRI CASTG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.