RLG00000000616

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000878
Physical Location & Seq
Reverse (-)
2647360 .. 2648652
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000616

Sequence Viewer

Length: 426 bp
ATGACCTCCACAACAGCTGCCATGAGCTTCGTGGACGGTAACCATGGCGCTCTGGGCTTGCCCACTTCCTCAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCTCTACCTCCTGACATCACCGGCGTCACCGCCGGGGCATTACCACTCCCTGGCCGTCACTTCCCAAGGTCAGCTTTGGGCATGGGGCCGAGACCTCGAGGCCCAGCTGGGCCGTGGAGGTCCTTCTCCGAGAGTGCTAACACCATTGAGGGAGAGTGTGTGGTTCACTCGTTCAAGAACTACACCAAGCTCGGAAATGTGGGAGCTGAGCATTACTACTGTAGATTTGAGTACAAGGCTGCTACTGGGGCTTTTACTCCTGATAAGAGTTGCTATGTGAGTTTCCTGGTCTTTGCGTTATGCGCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

142

Amino Acids

14.89

Weight (kDa)

7.7

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 166
AcyI GRCGYC 2 cut(s) 90, 138
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 85, 164
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 2 cut(s) 163, 399
AluBI AGCT 6 cut(s) 17, 27, 188, 221, 304, 320
AluI AGCT 6 cut(s) 17, 27, 188, 221, 304, 320
Alw26I GTCTC 1 cut(s) 199
Ama87I CYCGRG 2 cut(s) 105, 210
AoxI GGCC 5 cut(s) 76, 166, 200, 214, 224
ApeKI GCWGC 2 cut(s) 17, 353
AspLEI GCGC 2 cut(s) 50, 419
AspS9I GGNCC 6 cut(s) 76, 109, 200, 215, 224, 234
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 124, 133
AvaI CYCGRG 2 cut(s) 105, 210
AvaII GGWCC 2 cut(s) 109, 234
BanII GRGCYC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 4, 340
BceAI ACGGC 2 cut(s) 153, 211
BciT130I CCWGG 2 cut(s) 165, 401
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 199
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 2 cut(s) 18, 354
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 2 cut(s) 19, 355
Bme1390I CCNGG 3 cut(s) 148, 165, 401
Bme18I GGWCC 2 cut(s) 109, 234
BmeT110I CYCGRG 2 cut(s) 105, 210
BmgT120I GGNCC 6 cut(s) 76, 109, 200, 215, 224, 234
BmiI GGNNCC 3 cut(s) 110, 111, 201
BmrFI CCNGG 3 cut(s) 148, 165, 401
BmrI ACTGGG 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 2 cut(s) 90, 138
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 6 cut(s) 43, 79, 147, 163, 179, 227
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 164
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 2 cut(s) 165, 401
BseDI CCNNGG 6 cut(s) 43, 79, 147, 163, 179, 227
BseLI CCNNNNNNNGG 2 cut(s) 85, 164
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 4, 340
BseYI CCCAGC 2 cut(s) 217, 221
BshFI GGCC 5 cut(s) 78, 168, 202, 216, 226
BsiHKCI CYCGRG 2 cut(s) 105, 210
BsiSI CCGG 2 cut(s) 135, 147
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 85, 164
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 5 cut(s) 78, 168, 202, 216, 226
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 2 cut(s) 105, 210
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 1 cut(s) 144
BspANI GGCC 5 cut(s) 78, 168, 202, 216, 226
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 110, 111, 201
BspTNI GGTCTC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 6 cut(s) 43, 79, 147, 163, 179, 227
BssNI GRCGYC 2 cut(s) 90, 138
BssT1I CCWWGG 3 cut(s) 43, 79, 179
Bst2UI CCWGG 2 cut(s) 165, 401
Bst4CI ACNGT 2 cut(s) 38, 335
BstACI GRCGYC 2 cut(s) 90, 138
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 2 cut(s) 43, 227
BstEII GGTNACC 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 419
BstMAI GTCTC 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 54, 362, 416
BstNI CCWGG 2 cut(s) 165, 401
BstPI GGTNACC 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 146, 163, 399
BstSFI CTRYAG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 4, 340
BsuRI GGCC 5 cut(s) 78, 168, 202, 216, 226
BtgI CCRYGG 2 cut(s) 43, 227
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 2 cut(s) 50, 419
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 6 cut(s) 76, 109, 200, 215, 224, 234
CseI GACGC 2 cut(s) 98, 127
Csp6I GTAC 1 cut(s) 346
CviAII CATG 3 cut(s) 22, 44, 196
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 43, 79, 179
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 109, 234
Eco88I CYCGRG 2 cut(s) 105, 210
Eco91I GGTNACC 1 cut(s) 38
EcoO109I RGGNCCY 2 cut(s) 109, 234
EcoO65I GGTNACC 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 163, 399
EcoT14I CCWWGG 3 cut(s) 43, 79, 179
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 3 cut(s) 43, 79, 179
FaeI CATG 3 cut(s) 25, 47, 199
FaiI YATR 5 cut(s) 23, 45, 197, 390, 415
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 21, 43, 195
Fnu4HI GCNGC 2 cut(s) 18, 354
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 18, 354
GlaI GCGC 2 cut(s) 49, 418
GluI GCNGC 2 cut(s) 18, 354
GsaI CCCAGC 2 cut(s) 221, 225
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 5 cut(s) 78, 168, 202, 216, 226
HapII CCGG 2 cut(s) 135, 147
HgaI GACGC 2 cut(s) 98, 127
HhaI GCGC 2 cut(s) 50, 419
Hin1I GRCGYC 2 cut(s) 90, 138
Hin1II CATG 3 cut(s) 25, 47, 199
Hin6I GCGC 2 cut(s) 48, 417
HinP1I GCGC 2 cut(s) 48, 417
HpaII CCGG 2 cut(s) 135, 147
HphI GGTGA 2 cut(s) 124, 133
Hpy166II GTNNAC 3 cut(s) 34, 88, 280
Hpy188I TCNGA 3 cut(s) 244, 308, 425
Hpy188III TCNNGA 3 cut(s) 125, 289, 374
Hpy8I GTNNAC 3 cut(s) 34, 88, 280
HpyAV CCTTC 2 cut(s) 123, 247
HpyCH4III ACNGT 2 cut(s) 38, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 362, 416
HpyF3I CTNAG 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 90, 138
Hsp92II CATG 3 cut(s) 25, 47, 199
HspAI GCGC 2 cut(s) 48, 417
KflI GGGWCCC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 2 cut(s) 4, 340
MaeIII GTNAC 3 cut(s) 38, 139, 170
MhlI GDGCHC 1 cut(s) 102
MnlI CCTC 7 cut(s) 16, 79, 132, 206, 219, 225, 256
MspA1I CMGCKG 2 cut(s) 17, 221
MspI CCGG 2 cut(s) 135, 147
MspR9I CCNGG 3 cut(s) 148, 165, 401
MvaI CCWGG 2 cut(s) 165, 401
MwoI GCNNNNNNNGC 3 cut(s) 54, 362, 416
NciI CCSGG 1 cut(s) 148
NcoI CCATGG 1 cut(s) 43
NlaIII CATG 3 cut(s) 25, 47, 199
NlaIV GGNNCC 3 cut(s) 110, 111, 201
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 139, 170
PaeR7I CTCGAG 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 2 cut(s) 19, 355
PpuMI RGGWCCY 2 cut(s) 109, 234
Psp5II RGGWCCY 2 cut(s) 109, 234
Psp6I CCWGG 2 cut(s) 163, 399
PspEI GGTNACC 1 cut(s) 38
PspFI CCCAGC 2 cut(s) 217, 221
PspGI CCWGG 2 cut(s) 163, 399
PspN4I GGNNCC 3 cut(s) 110, 111, 201
PspPI GGNCC 6 cut(s) 76, 109, 200, 215, 224, 234
PspPPI RGGWCCY 2 cut(s) 109, 234
PspXI VCTCGAGB 1 cut(s) 210
PvuII CAGCTG 2 cut(s) 17, 221
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SatI GCNGC 2 cut(s) 18, 354
Sau96I GGNCC 6 cut(s) 76, 109, 200, 215, 224, 234
ScrFI CCNGG 3 cut(s) 148, 165, 401
SduI GDGCHC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 210
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 109, 234
SlaI CTCGAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SsiI CCGC 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 146, 163, 399
StyI CCWWGG 3 cut(s) 43, 79, 179
TaaI ACNGT 2 cut(s) 38, 335
TaqI TCGA 1 cut(s) 211
TatI WGTACW 1 cut(s) 345
TseFI GTSAC 2 cut(s) 139, 170
TseI GCWGC 2 cut(s) 17, 353
Tsp45I GTSAC 2 cut(s) 139, 170
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 109, 234
XcmI CCANNNNNNNNNTGG 3 cut(s) 28, 70, 225
XhoI CTCGAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.