Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

69150462 .. 69151145

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG512400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATCCCCACAACAGCTGCCATGAGCTTCGGGGACGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCCCTACCTCCTGACATCACCGGCGTCACCGCCGGGGCATTCCCACTCCCTGGCCGTCACTTCCGAAGGTCAGCTTTGGGTATGGGCCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGTTTGTTAATGTGGCCAAGATAGGATTAAATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCTGCGGCCATTGGAGATGATGGTTCTCTGTGGGTTTGGGGAAAGTCGAAGCGTGGCCAACTTGGTCTGGGAGAGCAAGTCATGGAGGCTGTGGAGTTGAAGCACTTGCTGGAGAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

145

Amino Acids

15.29

Weight (kDa)

9.73

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	88 - 133	1.5e-06	RCC1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	2 cut(s)	144, 320
AcoI	YGGCCR	5 cut(s)	166, 224, 258, 321, 370
AcyI	GRCGYC	2 cut(s)	90, 138
AfiI	CCNNNNNNNGG	2 cut(s)	85, 164
AgsI	TTSAA	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	4 cut(s)	17, 27, 188, 221
AluI	AGCT	4 cut(s)	17, 27, 188, 221
Alw26I	GTCTC	1 cut(s)	199
Ama87I	CYCGRG	3 cut(s)	105, 202, 210
AoxI	GGCC	8 cut(s)	76, 166, 199, 214, 224, 258, 321, 370
ApaI	GGGCCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	6 cut(s)	76, 109, 199, 200, 215, 234
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	124, 133
AvaI	CYCGRG	3 cut(s)	105, 202, 210
AvaII	GGWCC	2 cut(s)	109, 234
BaeGI	GKGCMC	1 cut(s)	203
BalI	TGGCCA	2 cut(s)	260, 372
BanII	GRGCYC	2 cut(s)	102, 203
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	3 cut(s)	52, 153, 211
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	2 cut(s)	18, 321
BlsI	GCNGC	2 cut(s)	19, 322
Bme1390I	CCNGG	2 cut(s)	148, 165
Bme18I	GGWCC	2 cut(s)	109, 234
BmeT110I	CYCGRG	3 cut(s)	105, 202, 210
BmgT120I	GGNCC	6 cut(s)	76, 109, 199, 200, 215, 234
BmiI	GGNNCC	3 cut(s)	110, 111, 201
BmrFI	CCNGG	2 cut(s)	148, 165
BmsI	GCATC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	2 cut(s)	90, 138
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	5 cut(s)	43, 79, 147, 163, 227
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 164
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	5 cut(s)	43, 79, 147, 163, 227
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	85, 164
BseSI	GKGCMC	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 260, 323, 372
BsiEI	CGRYCG	1 cut(s)	227
BsiHKCI	CYCGRG	3 cut(s)	105, 202, 210
BsiSI	CCGG	3 cut(s)	135, 147, 306
BslFI	GGGAC	2 cut(s)	47, 95
BslI	CCNNNNNNNGG	2 cut(s)	85, 164
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	47, 95
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 260, 323, 372
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	3 cut(s)	105, 202, 210
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	102, 203
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	144, 320
BspANI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 260, 323, 372
BspLI	GGNNCC	3 cut(s)	110, 111, 201
BspTNI	GGTCTC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	5 cut(s)	43, 79, 147, 163, 227
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	2 cut(s)	90, 138
BssT1I	CCWWGG	2 cut(s)	43, 79
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	2 cut(s)	90, 138
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	2 cut(s)	43, 227
BstF5I	GGATG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	146, 163
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	224
BsuRI	GGCC	8 cut(s)	78, 168, 201, 216, 226, 260, 323, 372
BtgI	CCRYGG	2 cut(s)	43, 227
BtsCI	GGATG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	6 cut(s)	76, 109, 199, 200, 215, 234
CseI	GACGC	2 cut(s)	98, 127
CviAII	CATG	3 cut(s)	22, 44, 397
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	5 cut(s)	166, 224, 258, 321, 370
EagI	CGGCCG	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	43, 79
Eco24I	GRGCYC	2 cut(s)	102, 203
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	109, 234
Eco52I	CGGCCG	1 cut(s)	224
Eco88I	CYCGRG	3 cut(s)	105, 202, 210
EcoO109I	RGGNCCY	2 cut(s)	109, 234
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	43, 79
EcoT38I	GRGCYC	2 cut(s)	102, 203
ErhI	CCWWGG	2 cut(s)	43, 79
FaeI	CATG	3 cut(s)	25, 47, 400
FaiI	YATR	4 cut(s)	23, 45, 197, 398
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	47, 95
FatI	CATG	3 cut(s)	21, 43, 396
Fnu4HI	GCNGC	2 cut(s)	18, 321
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	2 cut(s)	102, 203
Fsp4HI	GCNGC	2 cut(s)	18, 321
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	18, 321
GsaI	CCCAGC	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	8 cut(s)	78, 168, 201, 216, 226, 260, 323, 372
HapII	CCGG	3 cut(s)	135, 147, 306
HgaI	GACGC	2 cut(s)	98, 127
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	90, 138
Hin1II	CATG	3 cut(s)	25, 47, 400
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	135, 147, 306
HphI	GGTGA	2 cut(s)	124, 133
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	179, 244
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	123, 174, 247
HpyCH4V	TGCA	2 cut(s)	296, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
Hsp92I	GRCGYC	2 cut(s)	90, 138
Hsp92II	CATG	3 cut(s)	25, 47, 400
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	3
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	139, 170
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MhlI	GDGCHC	2 cut(s)	102, 203
MlsI	TGGCCA	2 cut(s)	260, 372
MluNI	TGGCCA	2 cut(s)	260, 372
MnlI	CCTC	5 cut(s)	132, 206, 219, 225, 394
Mox20I	TGGCCA	2 cut(s)	260, 372
MscI	TGGCCA	2 cut(s)	260, 372
MseI	TTAA	3 cut(s)	71, 252, 272
Msp20I	TGGCCA	2 cut(s)	260, 372
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	3 cut(s)	135, 147, 306
MspR9I	CCNGG	2 cut(s)	148, 165
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NciI	CCSGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	25, 47, 400
NlaIV	GGNNCC	3 cut(s)	110, 111, 201
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	139, 170
PaeR7I	CTCGAG	1 cut(s)	210
PctI	GAATGC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	19, 322
PpuMI	RGGWCCY	2 cut(s)	109, 234
Psp5II	RGGWCCY	2 cut(s)	109, 234
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	110, 111, 201
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	6 cut(s)	76, 109, 199, 200, 215, 234
PspPPI	RGGWCCY	2 cut(s)	109, 234
PspXI	VCTCGAGB	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	71, 252, 272
SatI	GCNGC	2 cut(s)	18, 321
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	6 cut(s)	76, 109, 199, 200, 215, 234
ScrFI	CCNGG	2 cut(s)	148, 165
SduI	GDGCHC	2 cut(s)	102, 203
SetI	ASST	8 cut(s)	19, 29, 124, 185, 190, 211, 223, 236
SfaNI	GCATC	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	109, 234
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SsiI	CCGC	2 cut(s)	144, 320
StyD4I	CCNGG	2 cut(s)	146, 163
StyI	CCWWGG	2 cut(s)	43, 79
TaqI	TCGA	2 cut(s)	211, 362
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	71, 252, 272
Tru9I	TTAA	3 cut(s)	71, 252, 272
TseFI	GTSAC	2 cut(s)	139, 170
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	139, 170
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	109, 234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 225
XhoI	CTCGAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.