Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

12473909 .. 12474690

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCAGGACTGGGATCGGTGGTGAAGACCCAGCGTCTAGTGAACGCGGTCGTCCAAAGGTTTCAAAGATGCATGACCACCACAACCATAGCTGTCATGAGCTTCGGGGATGGCAACCATGGCGCTCTGGGTTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACCCGGGTCCCTTCTCTGCCTCCTGACATCACCAGCGTCGCCGCCGGGCATTACCACTCCCTGGCCATCACTTCCGAAGGCCAGCTTTGGGCTTGGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCCAGAGATTTGTGGAATGAACCAAGGAGAGTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

118

Amino Acids

12.55

Weight (kDa)

8.0

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	32 - 115	2.8e-16	RCC1-like domain
RCC1	PF00415	34 - 82	7.7e-09	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	69 - 94	2.2e-09	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	47, 219
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	240, 298
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	4 cut(s)	11, 160, 238, 265
AgsI	TTSAA	1 cut(s)	65
AhdI	GACNNNNNGTC	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	4, 237
AluBI	AGCT	4 cut(s)	92, 102, 262, 295
AluI	AGCT	4 cut(s)	92, 102, 262, 295
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	180, 284
AoxI	GGCC	6 cut(s)	151, 240, 256, 274, 288, 298
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	5 cut(s)	151, 184, 274, 289, 308
AsuC2I	CCSGG	3 cut(s)	181, 182, 223
AsuHPI	GGTGA	2 cut(s)	34, 199
AvaI	CYCGRG	2 cut(s)	180, 284
AvaII	GGWCC	2 cut(s)	184, 308
BalI	TGGCCA	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	32
BccI	CCATC	2 cut(s)	104, 251
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	6, 239
BcnI	CCSGG	3 cut(s)	181, 182, 223
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	5 cut(s)	6, 181, 182, 223, 239
Bme18I	GGWCC	2 cut(s)	184, 308
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmeT110I	CYCGRG	2 cut(s)	180, 284
BmgT120I	GGNCC	5 cut(s)	151, 184, 274, 289, 308
BmiI	GGNNCC	3 cut(s)	185, 186, 275
BmrFI	CCNGG	5 cut(s)	6, 181, 182, 223, 239
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	32
BpuMI	CCSGG	3 cut(s)	181, 182, 223
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	6 cut(s)	118, 154, 180, 237, 301, 338
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 160, 238, 265
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	6, 239
BseDI	CCNNGG	6 cut(s)	118, 154, 180, 237, 301, 338
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	11, 160, 238, 265
BseNI	ACTGG	1 cut(s)	15
BseX3I	CGGCCG	1 cut(s)	298
BseYI	CCCAGC	2 cut(s)	30, 291
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	2 cut(s)	51, 301
BshFI	GGCC	6 cut(s)	153, 242, 258, 276, 290, 300
BsiEI	CGRYCG	2 cut(s)	51, 301
BsiHKCI	CYCGRG	2 cut(s)	180, 284
BsiSI	CCGG	2 cut(s)	181, 222
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	11, 160, 238, 265
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	6 cut(s)	153, 242, 258, 276, 290, 300
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	2 cut(s)	180, 284
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	2 cut(s)	47, 219
BspANI	GGCC	6 cut(s)	153, 242, 258, 276, 290, 300
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	185, 186, 275
BspPI	GGATC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	6 cut(s)	118, 154, 180, 237, 301, 338
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	118, 154, 338
Bst2UI	CCWGG	2 cut(s)	6, 239
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	260
BstDSI	CCRYGG	2 cut(s)	118, 301
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	2 cut(s)	51, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	2 cut(s)	6, 239
BstSCI	CCNGG	5 cut(s)	4, 179, 180, 221, 237
BstUI	CGCG	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	6 cut(s)	153, 242, 258, 276, 290, 300
BtgI	CCRYGG	2 cut(s)	118, 301
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	260
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	5 cut(s)	151, 184, 274, 289, 308
Cfr9I	CCCGGG	1 cut(s)	180
CseI	GACGC	3 cut(s)	23, 173, 202
CviAII	CATG	4 cut(s)	73, 97, 119, 351
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DriI	GACNNNNNGTC	1 cut(s)	33
EaeI	YGGCCR	2 cut(s)	240, 298
EagI	CGGCCG	1 cut(s)	298
Eam1105I	GACNNNNNGTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	3 cut(s)	118, 154, 338
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	184, 308
Eco52I	CGGCCG	1 cut(s)	298
Eco88I	CYCGRG	2 cut(s)	180, 284
EcoO109I	RGGNCCY	2 cut(s)	184, 308
EcoRII	CCWGG	2 cut(s)	4, 237
EcoT14I	CCWWGG	3 cut(s)	118, 154, 338
EcoT22I	ATGCAT	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	3 cut(s)	118, 154, 338
FaeI	CATG	4 cut(s)	76, 100, 122, 354
FaiI	YATR	5 cut(s)	74, 89, 98, 120, 352
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	72, 96, 118, 350
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	2 cut(s)	34, 295
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	6 cut(s)	153, 242, 258, 276, 290, 300
HapII	CCGG	2 cut(s)	181, 222
HgaI	GACGC	3 cut(s)	23, 173, 202
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	76, 100, 122, 354
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	181, 222
HphI	GGTGA	2 cut(s)	34, 199
Hpy166II	GTNNAC	2 cut(s)	43, 163
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	97, 200
Hpy8I	GTNNAC	2 cut(s)	43, 163
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	198, 248, 321
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	76, 100, 122, 354
HspAI	GCGC	1 cut(s)	123
KflI	GGGWCCC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	14
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	242
MnlI	CCTC	4 cut(s)	207, 280, 293, 299
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	2 cut(s)	181, 222
MspR9I	CCNGG	5 cut(s)	6, 181, 182, 223, 239
MvaI	CCWGG	2 cut(s)	6, 239
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	3 cut(s)	181, 182, 223
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	4 cut(s)	76, 100, 122, 354
NlaIV	GGNNCC	3 cut(s)	185, 186, 275
NmeAIII	GCCGAG	2 cut(s)	276, 302
NsiI	ATGCAT	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	220
PpuMI	RGGWCCY	2 cut(s)	184, 308
Psp5II	RGGWCCY	2 cut(s)	184, 308
Psp6I	CCWGG	2 cut(s)	4, 237
PspFI	CCCAGC	2 cut(s)	30, 291
PspGI	CCWGG	2 cut(s)	4, 237
PspN4I	GGNNCC	3 cut(s)	185, 186, 275
PspPI	GGNCC	5 cut(s)	151, 184, 274, 289, 308
PspPPI	RGGWCCY	2 cut(s)	184, 308
PspXI	VCTCGAGB	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	5 cut(s)	151, 184, 274, 289, 308
ScrFI	CCNGG	5 cut(s)	6, 181, 182, 223, 239
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	7 cut(s)	62, 94, 104, 264, 285, 297, 310
SfaNI	GCATC	1 cut(s)	59
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	184, 308
SlaI	CTCGAG	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SsiI	CCGC	2 cut(s)	47, 219
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	5 cut(s)	4, 179, 180, 221, 237
StyI	CCWWGG	3 cut(s)	118, 154, 338
TaqI	TCGA	1 cut(s)	285
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	348
TspMI	CCCGGG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	184, 308
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 299
XhoI	CTCGAG	1 cut(s)	284
XmaI	CCCGGG	1 cut(s)	180
XspI	CTAG	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.