Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

1637827 .. 1640449

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACCCCCACAACGTTTGCCATGAGCTTCGGGGACGGCAACCATGGCGCTCCGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCGACTCGGGTCCCACTCGACATCACGGGCGTCACGGGCGTCGCACCGGGCATTACCACTCCCCGACCGTCACTTCCGAAGGTCGGCTTTGGGCATGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGGTGGACCCTAAGCACCGGAAGAAAAGACTTAAATTGCAAGAGGCGATACAAAATGCAGGGCTGCTGTTTGTGTTCTTTCTGGTGCTCTTGGATTGCTATCATGTGGTATGGGGATTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

9.65

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	206
AclI	AACGTT	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	220
AcyI	GRCGYC	3 cut(s)	90, 128, 137
AfiI	CCNNNNNNNGG	2 cut(s)	85, 181
AluBI	AGCT	2 cut(s)	27, 217
AluI	AGCT	2 cut(s)	27, 217
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	195
Ama87I	CYCGRG	2 cut(s)	104, 206
AoxI	GGCC	4 cut(s)	76, 196, 210, 220
ApeKI	GCWGC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	6 cut(s)	76, 108, 196, 211, 230, 246
AsuC2I	CCSGG	2 cut(s)	54, 146
AvaI	CYCGRG	2 cut(s)	104, 206
AvaII	GGWCC	3 cut(s)	108, 230, 246
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	290
BceAI	ACGGC	2 cut(s)	52, 207
BcnI	CCSGG	2 cut(s)	54, 146
BcoDI	GTCTC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	54, 146
Bme18I	GGWCC	3 cut(s)	108, 230, 246
BmeT110I	CYCGRG	2 cut(s)	104, 206
BmgT120I	GGNCC	6 cut(s)	76, 108, 196, 211, 230, 246
BmiI	GGNNCC	3 cut(s)	109, 110, 248
BmrFI	CCNGG	2 cut(s)	54, 146
BoxI	GACNNNNGTC	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	54, 146
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	3 cut(s)	90, 128, 137
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	43, 79, 223, 239
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 181
Bse8I	GATNNNNATC	1 cut(s)	338
BseDI	CCNNGG	4 cut(s)	43, 79, 223, 239
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	85, 181
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	213
Bsh1285I	CGRYCG	2 cut(s)	166, 223
BshFI	GGCC	4 cut(s)	78, 198, 212, 222
BsiEI	CGRYCG	2 cut(s)	166, 223
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	104, 206
BsiSI	CCGG	3 cut(s)	53, 145, 258
BslFI	GGGAC	2 cut(s)	47, 94
BslI	CCNNNNNNNGG	2 cut(s)	85, 181
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	47, 94
BsnI	GGCC	4 cut(s)	78, 198, 212, 222
Bso31I	GGTCTC	1 cut(s)	195
BsoBI	CYCGRG	2 cut(s)	104, 206
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp19I	CCATGG	1 cut(s)	43
BspANI	GGCC	4 cut(s)	78, 198, 212, 222
BspLI	GGNNCC	3 cut(s)	109, 110, 248
BspTNI	GGTCTC	1 cut(s)	195
BssECI	CCNNGG	4 cut(s)	43, 79, 223, 239
BssNI	GRCGYC	3 cut(s)	90, 128, 137
BssT1I	CCWWGG	2 cut(s)	43, 79
Bst4CI	ACNGT	1 cut(s)	167
BstACI	GRCGYC	3 cut(s)	90, 128, 137
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	2 cut(s)	43, 223
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	195
BstMCI	CGRYCG	2 cut(s)	166, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 54, 134
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	52, 144
BstV1I	GCAGC	1 cut(s)	290
BstZI	CGGCCG	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	78, 198, 212, 222
BtgI	CCRYGG	2 cut(s)	43, 223
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	6 cut(s)	76, 108, 196, 211, 230, 246
CseI	GACGC	3 cut(s)	98, 117, 126
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	4 cut(s)	22, 44, 193, 343
CviJI	RGCY	9 cut(s)	27, 57, 78, 185, 198, 212, 217, 222, 303
CviKI_1	RGCY	9 cut(s)	27, 57, 78, 185, 198, 212, 217, 222, 303
DdeI	CTNAG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	43, 79
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	108, 230, 246
Eco52I	CGGCCG	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	104, 206
EcoO109I	RGGNCCY	2 cut(s)	108, 230
EcoT14I	CCWWGG	2 cut(s)	43, 79
ErhI	CCWWGG	2 cut(s)	43, 79
FaeI	CATG	4 cut(s)	25, 47, 196, 346
FaiI	YATR	5 cut(s)	23, 45, 194, 344, 351
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	2 cut(s)	47, 94
FatI	CATG	4 cut(s)	21, 43, 192, 342
Fnu4HI	GCNGC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	304
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	304
GsaI	CCCAGC	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	4 cut(s)	78, 198, 212, 222
HapII	CCGG	3 cut(s)	53, 145, 258
HgaI	GACGC	3 cut(s)	98, 117, 126
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	3 cut(s)	90, 128, 137
Hin1II	CATG	4 cut(s)	25, 47, 196, 346
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	102
HpaII	CCGG	3 cut(s)	53, 145, 258
Hpy166II	GTNNAC	2 cut(s)	88, 246
Hpy188I	TCNGA	2 cut(s)	176, 240
Hpy8I	GTNNAC	2 cut(s)	88, 246
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	171, 243
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	279, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 54, 134
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	3 cut(s)	90, 128, 137
Hsp92II	CATG	4 cut(s)	25, 47, 196, 346
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	6 cut(s)	66, 158, 227, 271, 284, 307
Lsp1109I	GCAGC	1 cut(s)	290
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	129, 167
MboII	GAAGA	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	202, 215, 221, 234, 276
MseI	TTAA	2 cut(s)	71, 272
MspI	CCGG	3 cut(s)	53, 145, 258
MspR9I	CCNGG	2 cut(s)	54, 146
MwoI	GCNNNNNNNGC	3 cut(s)	45, 54, 134
NciI	CCSGG	2 cut(s)	54, 146
NcoI	CCATGG	1 cut(s)	43
NlaIII	CATG	4 cut(s)	25, 47, 196, 346
NlaIV	GGNNCC	3 cut(s)	109, 110, 248
NmeAIII	GCCGAG	2 cut(s)	198, 224
NmuCI	GTSAC	2 cut(s)	129, 167
PaeR7I	CTCGAG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PpuMI	RGGWCCY	2 cut(s)	108, 230
PshAI	GACNNNNGTC	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	14
Psp5II	RGGWCCY	2 cut(s)	108, 230
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	3 cut(s)	109, 110, 248
PspPI	GGNCC	6 cut(s)	76, 108, 196, 211, 230, 246
PspPPI	RGGWCCY	2 cut(s)	108, 230
PspXI	VCTCGAGB	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	71, 272
SatI	GCNGC	1 cut(s)	304
Sau96I	GGNCC	6 cut(s)	76, 108, 196, 211, 230, 246
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	54, 146
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	7 cut(s)	17, 29, 182, 207, 219, 232, 245
Sfr274I	CTCGAG	1 cut(s)	206
SinI	GGWCC	3 cut(s)	108, 230, 246
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	52, 144
StyI	CCWWGG	2 cut(s)	43, 79
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	116, 207
TasI	AATT	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	71, 272
Tru9I	TTAA	2 cut(s)	71, 272
TseFI	GTSAC	2 cut(s)	129, 167
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	2 cut(s)	129, 167
VpaK11BI	GGWCC	3 cut(s)	108, 230, 246
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 221
XhoI	CTCGAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.