Rh2DG150600

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000878
Physical Location & Seq
Forward (+)
12579636 .. 12585414
5779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG150600.1

Sequence Viewer

Length: 879 bp
ATGACCCGTGACCGGCACTTCCGGAGGAGATATGTTTCGGAAATCCCAAAACTGGGGAAGTATCAGTTTCGGAGGAAGGCAGAGGCAATCGAAAGAAAAACAAAAACAGGAGGGCAGTTCCATGTATCCAAAGGGCTCTTCTTGTCTGATCACTATGATGTTCAGAGTGCTAATACCATTGAGGGAAAGTGTGTGGTTCACTCGTTCAAGAACTACACGCAGCTCGAAAATGTGGGAGCTGAGTATTACTACTGTAGATTTGAGAACAAGGCTGCTACTGGGGCTTTTACTTCTGATAGAGTTGCTATGTATTGCGAGTCTGAGATGCCGTATAACCTGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTTTCATCCAGCATGCGTGAACATCTCAAATGAAGTAGCCAAAAAATTGGTGGACCCTAAGCGCCAAAAGAAATTACTTAAATTGCAAGAGGCGATACAAAATGCAGTGCTGCTGTTTGTGTTCTTGGATTGCTATCATGTGCTTACTCGGTTCTCTGGCTTCGCCATTGGGGCCACCCAAAACTACTTCCCAACTCACGCCGGAAAACTTCGCATGGCTATGAAGTTCACGGCTTCTATCTCAGTGGCTTTCTATATTGCTACCGCACTTCCGCAGCCTTGGGACCACGTGCCGTACATGATGTACGTCTTCTATTTGATAGGCCACGGTCTCAGTTTGGTAAGAAATATAAGGCTGGCTTATTACCAGCACGTTGCCAATGGACTTATGCGTGGCTTATGCGCGCGGCAACAGCGGTTGATAAGAACGCGCCCACAGTTGCCGGTGACAGTCAGTGGCGGGCTTAATATGTCCAACCACCGAATTGCTAACCATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

292

Amino Acids

33.66

Weight (kDa)

9.52

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 105 - 140 1.4e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 782, 784, 808
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 5 cut(s) 642, 650, 784, 793, 837
AcvI CACGTG 1 cut(s) 667
AfaI GTAC 2 cut(s) 674, 683
AfiI CCNNNNNNNGG 3 cut(s) 12, 52, 53
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 336
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 223, 239
AluI AGCT 2 cut(s) 223, 239
Alw26I GTCTC 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 549, 700
ApeKI GCWGC 4 cut(s) 220, 272, 487, 652
AspLEI GCGC 4 cut(s) 441, 782, 784, 810
AspS9I GGNCC 3 cut(s) 430, 549, 661
AsuHPI GGTGA 1 cut(s) 835
AvaII GGWCC 2 cut(s) 430, 661
BanII GRGCYC 1 cut(s) 138
BbrPI CACGTG 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 679
BbvI GCAGC 4 cut(s) 232, 259, 474, 664
BceAI ACGGC 3 cut(s) 313, 624, 655
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 442
BfuI GTATCC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 5 cut(s) 221, 273, 488, 653, 785
BlsI GCNGC 5 cut(s) 222, 274, 489, 654, 786
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 2 cut(s) 430, 661
BmgT120I GGNCC 3 cut(s) 430, 549, 661
BmiI GGNNCC 3 cut(s) 432, 550, 662
BmrFI CCNGG 1 cut(s) 338
BmrI ACTGGG 2 cut(s) 62, 288
BmsI GCATC 1 cut(s) 315
BmuI ACTGGG 2 cut(s) 62, 288
BpiI GAAGAC 1 cut(s) 679
Bpu10I CCTNAGC 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 656, 703, 871
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 52, 53
Bse118I RCCGGY 2 cut(s) 12, 820
Bse1I ACTGG 3 cut(s) 57, 283, 380
Bse8I GATNNNNATC 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 3 cut(s) 656, 703, 871
BseGI GGATG 2 cut(s) 346, 382
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 3 cut(s) 12, 52, 53
BseMII CTCAG 4 cut(s) 231, 312, 633, 724
BseNI ACTGG 3 cut(s) 57, 283, 380
BsePI GCGCGC 1 cut(s) 780
BseRI GAGGAG 2 cut(s) 40, 377
BseXI GCAGC 4 cut(s) 232, 259, 474, 664
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 3 cut(s) 782, 784, 808
BshFI GGCC 2 cut(s) 551, 702
BsiSI CCGG 4 cut(s) 13, 22, 579, 821
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 12, 52, 53
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 2 cut(s) 551, 702
Bso31I GGTCTC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 138
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 1 cut(s) 148
Bsp19I CCATGG 1 cut(s) 871
BspACI CCGC 5 cut(s) 642, 650, 784, 793, 837
BspANI GGCC 2 cut(s) 551, 702
BspCNI CTCAG 4 cut(s) 232, 313, 632, 723
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 3 cut(s) 782, 784, 808
BspLI GGNNCC 3 cut(s) 432, 550, 662
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 713
BsrFI RCCGGY 2 cut(s) 12, 820
BsrI ACTGG 3 cut(s) 57, 283, 380
BssAI RCCGGY 2 cut(s) 12, 820
BssECI CCNNGG 3 cut(s) 656, 703, 871
BssHII GCGCGC 1 cut(s) 780
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 656, 871
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 4 cut(s) 254, 707, 816, 829
Bst6I CTCTTC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 4 cut(s) 391, 735, 782, 839
BstDEI CTNAG 5 cut(s) 240, 321, 435, 619, 710
BstDSI CCRYGG 2 cut(s) 703, 871
BstF5I GGATG 2 cut(s) 346, 382
BstFNI CGCG 3 cut(s) 782, 784, 808
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 4 cut(s) 441, 782, 784, 810
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 281, 548, 790
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 3 cut(s) 782, 784, 808
BstV1I GCAGC 4 cut(s) 232, 259, 474, 664
BstV2I GAAGAC 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 424
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 551, 702
BtgI CCRYGG 2 cut(s) 703, 871
BtsCI GGATG 2 cut(s) 346, 382
BtsI GCAGTG 2 cut(s) 362, 489
BtsIMutI CAGTG 4 cut(s) 362, 489, 627, 838
Cac8I GCNNGC 4 cut(s) 391, 735, 782, 839
CfoI GCGC 4 cut(s) 441, 782, 784, 810
Cfr10I RCCGGY 2 cut(s) 12, 820
Cfr13I GGNCC 3 cut(s) 430, 549, 661
Csp6I GTAC 2 cut(s) 673, 682
CviAII CATG 7 cut(s) 122, 349, 390, 515, 592, 676, 872
CviQI GTAC 2 cut(s) 673, 682
DdeI CTNAG 5 cut(s) 240, 321, 435, 619, 710
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 656, 871
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 430, 661
Eco72I CACGTG 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 656, 871
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 656, 871
FaeI CATG 7 cut(s) 125, 352, 393, 518, 595, 679, 875
FalI AAGNNNNNCTT 2 cut(s) 721, 753
FaqI GGGAC 1 cut(s) 674
FatI CATG 7 cut(s) 121, 348, 389, 514, 591, 675, 871
FauI CCCGC 1 cut(s) 830
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 5 cut(s) 221, 273, 488, 653, 785
FokI GGATG 2 cut(s) 353, 369
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 5 cut(s) 221, 273, 488, 653, 785
GlaI GCGC 4 cut(s) 440, 781, 783, 809
GluI GCNGC 5 cut(s) 221, 273, 488, 653, 785
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 2 cut(s) 551, 702
HapII CCGG 4 cut(s) 13, 22, 579, 821
HhaI GCGC 4 cut(s) 441, 782, 784, 810
Hin1II CATG 7 cut(s) 125, 352, 393, 518, 595, 679, 875
Hin6I GCGC 4 cut(s) 439, 780, 782, 808
HinP1I GCGC 4 cut(s) 439, 780, 782, 808
HinfI GANTC 1 cut(s) 317
HpaII CCGG 4 cut(s) 13, 22, 579, 821
HphI GGTGA 1 cut(s) 835
Hpy166II GTNNAC 4 cut(s) 199, 397, 430, 606
Hpy188I TCNGA 6 cut(s) 40, 72, 148, 165, 295, 322
Hpy188III TCNNGA 2 cut(s) 22, 208
Hpy8I GTNNAC 4 cut(s) 199, 397, 430, 606
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 4 cut(s) 254, 707, 816, 829
HpyCH4IV ACGT 3 cut(s) 666, 684, 750
HpyCH4V TGCA 4 cut(s) 355, 369, 463, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 548, 790
HpyF3I CTNAG 5 cut(s) 240, 321, 435, 619, 710
HpySE526I ACGT 3 cut(s) 666, 684, 750
Hsp92II CATG 7 cut(s) 125, 352, 393, 518, 595, 679, 875
HspAI GCGC 4 cut(s) 439, 780, 782, 808
Kpn2I TCCGGA 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 4 cut(s) 232, 259, 474, 664
LweI GCATC 1 cut(s) 315
MaeII ACGT 3 cut(s) 666, 684, 750
MaeIII GTNAC 2 cut(s) 8, 823
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 130, 679
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 4 cut(s) 422, 449, 458, 861
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 876
MnlI CCTC 8 cut(s) 18, 66, 76, 104, 175, 355, 356, 460
MroI TCCGGA 1 cut(s) 21
MseI TTAA 2 cut(s) 456, 843
MslI CAYNNNNRTG 2 cut(s) 156, 596
MspA1I CMGCKG 1 cut(s) 793
MspI CCGG 4 cut(s) 13, 22, 579, 821
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 3 cut(s) 782, 784, 808
MwoI GCNNNNNNNGC 3 cut(s) 281, 548, 790
NcoI CCATGG 1 cut(s) 871
NdeII GATC 1 cut(s) 148
NlaIII CATG 7 cut(s) 125, 352, 393, 518, 595, 679, 875
NlaIV GGNNCC 3 cut(s) 432, 550, 662
NmuCI GTSAC 2 cut(s) 8, 823
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PauI GCGCGC 1 cut(s) 780
PciSI GCTCTTC 1 cut(s) 143
PkrI GCNGC 5 cut(s) 222, 274, 489, 654, 786
PleI GAGTC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 667
PmlI CACGTG 1 cut(s) 667
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 336
PspCI CACGTG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 432, 550, 662
PspPI GGNCC 3 cut(s) 430, 549, 661
PteI GCGCGC 1 cut(s) 780
RsaI GTAC 2 cut(s) 674, 683
RsaNI GTAC 2 cut(s) 673, 682
RseI CAYNNNNRTG 2 cut(s) 156, 596
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 456, 843
SatI GCNGC 5 cut(s) 221, 273, 488, 653, 785
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 3 cut(s) 430, 549, 661
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 138
SetI ASST 7 cut(s) 225, 241, 339, 348, 669, 687, 753
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 253
SinI GGWCC 2 cut(s) 430, 661
SmiMI CAYNNNNRTG 2 cut(s) 156, 596
SphI GCATGC 1 cut(s) 393
Sse9I AATT 4 cut(s) 422, 449, 458, 861
SsiI CCGC 5 cut(s) 642, 650, 784, 793, 837
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 656, 871
TaaI ACNGT 4 cut(s) 254, 707, 816, 829
TaiI ACGT 3 cut(s) 669, 687, 753
TaqI TCGA 2 cut(s) 90, 225
TasI AATT 4 cut(s) 422, 449, 458, 861
TauI GCSGC 1 cut(s) 787
Tru1I TTAA 2 cut(s) 456, 843
Tru9I TTAA 2 cut(s) 456, 843
TscAI CASTG 4 cut(s) 362, 489, 627, 838
TseFI GTSAC 2 cut(s) 8, 823
TseI GCWGC 4 cut(s) 220, 272, 487, 652
Tsp45I GTSAC 2 cut(s) 8, 823
TspDTI ATGAA 3 cut(s) 371, 423, 614
TspRI CASTG 4 cut(s) 362, 489, 627, 838
VpaK11BI GGWCC 2 cut(s) 430, 661
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.