Rh7DG479000

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000878
Physical Location & Seq
Reverse (-)
68430974 .. 68432560
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG479000.1

Sequence Viewer

Length: 216 bp
ATGTGGGAGCTGTGCATAATCTACTGTAGATTTGAGTACAAGGCTGCTACTGGGGCTTTTACTCCTGATAGAGTTGCTGTGTATTGCATGTCTGAGATGCCGTATAACCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTTTCATCCAGCATTCATGAACATCTCAAATGAAGTAGCCAAAAAATTGGTCTATGGGAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

71

Amino Acids

8.3

Weight (kDa)

4.68

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 29 - 63 7.5e-06 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 38
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AsuC2I CCSGG 1 cut(s) 110
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 85
BcnI CCSGG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 55, 152
BseGI GGATG 2 cut(s) 118, 154
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 55, 152
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 110
BsmI GAATGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 55, 152
Bst4CI ACNGT 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 118, 154
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 118, 154
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 165
Csp6I GTAC 1 cut(s) 37
CviAII CATG 3 cut(s) 88, 121, 166
CviJI RGCY 4 cut(s) 10, 44, 56, 188
CviKI_1 RGCY 4 cut(s) 10, 44, 56, 188
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 93
FaeI CATG 3 cut(s) 91, 124, 169
FaiI YATR 6 cut(s) 17, 89, 105, 122, 167, 204
FatI CATG 3 cut(s) 87, 120, 165
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 125, 141
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 110
Hin1II CATG 3 cut(s) 91, 124, 169
HpaII CCGG 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 65, 166
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 15, 87, 127, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 3 cut(s) 91, 124, 169
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 36, 78, 123, 133, 171
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 87
MluCI AATT 1 cut(s) 194
MnlI CCTC 2 cut(s) 127, 128
MseI TTAA 1 cut(s) 214
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 110
NlaIII CATG 3 cut(s) 91, 124, 169
NspI RCATGY 1 cut(s) 91
PagI TCATGA 1 cut(s) 165
PctI GAATGC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 46
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 110
SetI ASST 2 cut(s) 12, 120
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 26
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TscAI CASTG 1 cut(s) 134
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 4 cut(s) 143, 154, 182, 195
TspRI CASTG 1 cut(s) 134
XceI RCATGY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.