RLG00000017060

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000878
Physical Location & Seq
Forward (+)
12474817 .. 12475900
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017060

Sequence Viewer

Length: 669 bp
ATGGAGGCTGTTGTGCCTTCCCGAGTTGAAGCAGTTGCTGGAGAGAATATAACTAAGGTTGCACTTGGTTGGGGGCATGCTCTTGCATTGACCGAGGATGGAAAGTTGTTTGGTTGTGGTTATTTTGCTGACAGTAGGTTAGGAAGCATTAAAGAATCTTTGGAGACATCTCCACTAGAATCTACTTCAAATAGTCAAGAACTGTCGAGTTCATCTTTGGAAGCTGCTGAGAATGTATTGAAGTCTGAAGTTGTAGACATTGCATGTGGACTTGATCATTCATTAATTCTTTGTGGTGATGGGAAACTACTGAGCTGTGGGAGCAACGTATATGGTCAGTTGGGAAGAGAAAAACAGGATGTAGGATTGTTTCCTGTTGATATAAGTTTCCGTCCAATGTCTATAGCAGCCGGGCTTGGCCATTCTTTGGCAATTTGCCAGGGTGGGCCAGAAAATTTTCCATTAGGAGTTGAAGGCTTGGAAGGGAAAACTCCTGTATCAGTAGCAGGAGGTCGTGGGAATTCCATTGCTCTAGCATCAAAGAGAGAAGTGTGGGTTTGGGGTTCTGGTAAGAATGGAAGGCTTGGGTTAGGAAGCTCCTGTGATGAACTTGAACCAATTTTGCTGGACTCCGTAGAGAGGTGTGATGTTTTACAAGCTGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

223

Amino Acids

23.03

Weight (kDa)

4.67

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 5 - 149 2.2e-26 RCC1-like domain
RCC1_2 PF13540 17 - 41 5.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 84 - 113 2.2e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 100 - 145 1.6e-07 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 154 - 220 4.3e-09 RCC1-like domain
RCC1 PF00415 183 - 219 4.9e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 427
AccI GTMKAC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 454, 520
AcuI CTGAAG 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 427, 639
AgsI TTSAA 5 cut(s) 29, 189, 241, 473, 614
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 4 cut(s) 224, 315, 597, 659
AluI AGCT 4 cut(s) 224, 315, 597, 659
Alw26I GTCTC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 2 cut(s) 418, 446
ApeKI GCWGC 2 cut(s) 224, 407
ApoI RAATTY 2 cut(s) 454, 520
AseI ATTAAT 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BalI TGGCCA 1 cut(s) 420
BbvI GCAGC 2 cut(s) 211, 419
BccI CCATC 2 cut(s) 92, 293
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 176, 533
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 2 cut(s) 225, 408
BlsI GCNGC 2 cut(s) 226, 409
Bme1390I CCNGG 2 cut(s) 412, 440
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 446
BmrFI CCNGG 2 cut(s) 412, 440
BmsI GCATC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 412
BsaJI CCNNGG 2 cut(s) 93, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 639
Bse3DI GCAATG 2 cut(s) 258, 525
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 93, 439
BseGI GGATG 2 cut(s) 103, 364
BseLI CCNNNNNNNGG 2 cut(s) 427, 639
BseMI GCAATG 2 cut(s) 258, 525
BseMII CTCAG 2 cut(s) 219, 302
BseXI GCAGC 2 cut(s) 211, 419
BshFI GGCC 2 cut(s) 420, 448
BsiHKCI CYCGRG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 427, 639
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 2 cut(s) 420, 448
BsoBI CYCGRG 1 cut(s) 21
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 2 cut(s) 420, 448
BspCNI CTCAG 2 cut(s) 220, 303
BsrDI GCAATG 2 cut(s) 258, 525
BssECI CCNNGG 2 cut(s) 93, 439
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 134, 204
Bst6I CTCTTC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 54, 228, 311
BstF5I GGATG 2 cut(s) 103, 364
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 2 cut(s) 80, 267
BstSCI CCNGG 2 cut(s) 410, 438
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 211, 419
BsuRI GGCC 2 cut(s) 420, 448
BtsCI GGATG 2 cut(s) 103, 364
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 446
CviAII CATG 2 cut(s) 77, 264
DdeI CTNAG 3 cut(s) 54, 228, 311
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 80, 267
FaiI YATR 7 cut(s) 50, 78, 265, 331, 333, 383, 404
FatI CATG 2 cut(s) 76, 263
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 225, 408
FokI GGATG 2 cut(s) 110, 371
Fsp4HI GCNGC 2 cut(s) 225, 408
FspBI CTAG 2 cut(s) 176, 533
GluI GCNGC 2 cut(s) 225, 408
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 2 cut(s) 420, 448
HapII CCGG 1 cut(s) 411
Hin1II CATG 2 cut(s) 80, 267
HinfI GANTC 3 cut(s) 155, 179, 629
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 256, 269
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 21, 197
Hpy8I GTNNAC 2 cut(s) 256, 269
HpyAV CCTTC 4 cut(s) 27, 467, 476, 573
HpyCH4III ACNGT 2 cut(s) 134, 204
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 62, 86, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 3 cut(s) 54, 228, 311
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 80, 267
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 321, 602
Lsp1109I GCAGC 2 cut(s) 211, 419
LweI GCATC 1 cut(s) 545
MaeI CTAG 2 cut(s) 176, 533
MaeII ACGT 1 cut(s) 327
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 5 cut(s) 285, 432, 454, 520, 618
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 3 cut(s) 88, 503, 633
Mox20I TGGCCA 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 456
MscI TGGCCA 1 cut(s) 420
MseI TTAA 2 cut(s) 150, 284
Msp20I TGGCCA 1 cut(s) 420
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 2 cut(s) 412, 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 321
NciI CCSGG 1 cut(s) 412
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 80, 267
NspI RCATGY 2 cut(s) 80, 267
PaeI GCATGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 155, 179
PflMI CCANNNNNTGG 1 cut(s) 427
PkrI GCNGC 2 cut(s) 226, 409
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PshBI ATTAAT 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspPI GGNCC 1 cut(s) 446
PstNI CAGNNNCTG 1 cut(s) 38
SaqAI TTAA 2 cut(s) 150, 284
SatI GCNGC 2 cut(s) 225, 408
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 412, 440
SetI ASST 9 cut(s) 60, 140, 226, 317, 330, 514, 599, 644, 661
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 402
SphI GCATGC 1 cut(s) 80
Sse9I AATT 5 cut(s) 285, 432, 454, 520, 618
SspMI CTAG 2 cut(s) 176, 533
StyD4I CCNGG 2 cut(s) 410, 438
TaaI ACNGT 2 cut(s) 134, 204
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 206
TaqII GACCGA 1 cut(s) 107
TasI AATT 5 cut(s) 285, 432, 454, 520, 618
TfiI GAWTC 2 cut(s) 155, 179
Tru1I TTAA 2 cut(s) 150, 284
Tru9I TTAA 2 cut(s) 150, 284
TseI GCWGC 2 cut(s) 224, 407
TspDTI ATGAA 3 cut(s) 201, 270, 621
TspGWI ACGGA 2 cut(s) 380, 622
Van91I CCANNNNNTGG 1 cut(s) 427
VspI ATTAAT 1 cut(s) 284
XapI RAATTY 2 cut(s) 454, 520
XceI RCATGY 2 cut(s) 80, 267
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 2 cut(s) 176, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.