RchiOBHm_Chr2g0101211

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000878
Physical Location & Seq
Forward (+)
12879413 .. 12880993
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47583

Sequence Viewer

Length: 861 bp
ATGCAGCGGAAGGAAAAACAACAAAGTACTTGGAAATATAAGAAGGCAACGGTGATGAAAGGATCAAAGGACAAGGAACAAATCCAAGCACAAAGAACAAGAGTCAAGGATCAAAGAACAATGAGTCAGAGTCCAGGATCGGATCTCTGCTCTGATACCAAAGATTTGTGGAATGAACCAAGGAGAGTAACAGGATTGGATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCTGCGGCCTTTGGAGATGATGGTTCTTTGTGGGTTTGGGGAAAGTCAAAGCGTGGCCAGCTTGGTCTGGGAGAGCAAGTCATGGAGGCTGTGGTGCCTTCCCGAGTTGAAGCACTTGCTGGAGAGAAAATAACTAAGGTTGCACTTGGTTGGGGGCATGCTCTTGCATTGACCGAGGATGGAAAGTTGTTTGGTTGTGGTTATTTTGCTGACGGTACGTTAGGAAGCATTAAAGAATCTTTGGAGACATCTCCACTAGAATCTACTTCGAATAGTCAAGAACTGTCGAGTTCATCTTTGGAAGCTGCTGAGAAGTTGGTTTTAGAAGGAATGGCTAAGGAGAATAACATGCCAATAGTTTGGGAACCCAGTTTGGTCAGGGAACTTCAGTGTATTATTGTTGTAGACATTGCATGTGGACTTGATCATTCATTAATTCTTTGTGTTTCAGGTGATGGGAAACTACTGAGCTGTGGGAGCAACGTATATGGTCAGTTGGGAAGAGAAAAACAGGATGTAGGATTGTTTCCTGTTGATATAAGTTTCCGTCCAATGTCTATAGCAGCCGGGCTTGGCCATTCTTTGGCGATTTGCCAGGTTCCATCATCAGATATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

286

Amino Acids

30.83

Weight (kDa)

5.56

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 48 - 278 2.9e-37 RCC1-like domain
RCC1 PF00415 87 - 137 7.6e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 124 - 148 5e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 214 - 245 2.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 232 - 277 2.4e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 823
AccI GTMKAC 1 cut(s) 645
AciI CCGC 2 cut(s) 7, 245
AclWI GGATC 5 cut(s) 70, 117, 145, 150, 207
AcoI YGGCCR 2 cut(s) 295, 814
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 2 cut(s) 28, 457
AfiI CCNNNNNNNGG 1 cut(s) 823
AgsI TTSAA 1 cut(s) 350
AjnI CCWGG 2 cut(s) 133, 834
AluBI AGCT 3 cut(s) 301, 545, 711
AluI AGCT 3 cut(s) 301, 545, 711
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 5 cut(s) 70, 117, 145, 150, 207
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 246, 295, 814
ApeKI GCWGC 3 cut(s) 4, 545, 803
AseI ATTAAT 1 cut(s) 674
AsuC2I CCSGG 1 cut(s) 808
AsuHPI GGTGA 2 cut(s) 64, 704
AsuII TTCGAA 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 342
BalI TGGCCA 2 cut(s) 297, 816
BanI GGYRCC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 16, 532, 815
BccI CCATC 4 cut(s) 254, 413, 689, 850
BciT130I CCWGG 2 cut(s) 135, 836
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 1 cut(s) 808
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 798
BisI GCNGC 4 cut(s) 5, 246, 546, 804
BlsI GCNGC 4 cut(s) 6, 247, 547, 805
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 135, 808, 836
BmeT110I CYCGRG 1 cut(s) 342
BmiI GGNNCC 3 cut(s) 336, 606, 840
BmrFI CCNGG 3 cut(s) 135, 808, 836
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 576
Bpu14I TTCGAA 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 179, 414
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse1I ACTGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 2 cut(s) 135, 836
BseDI CCNNGG 2 cut(s) 179, 414
BseGI GGATG 3 cut(s) 227, 424, 760
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 540, 698
BseNI ACTGG 1 cut(s) 609
BseXI GCAGC 3 cut(s) 16, 532, 815
BshFI GGCC 3 cut(s) 248, 297, 816
BshNI GGYRCC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 231, 807
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 1 cut(s) 479
BsnI GGCC 3 cut(s) 248, 297, 816
BsoBI CYCGRG 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 509
Bsp143I GATC 6 cut(s) 62, 109, 137, 142, 199, 664
BspACI CCGC 2 cut(s) 7, 245
BspANI GGCC 3 cut(s) 248, 297, 816
BspCNI CTCAG 2 cut(s) 541, 699
BspLI GGNNCC 3 cut(s) 336, 606, 840
BspPI GGATC 5 cut(s) 70, 117, 145, 150, 207
BspT104I TTCGAA 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 648
BsrI ACTGG 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 179, 414
BssMI GATC 6 cut(s) 62, 109, 137, 142, 199, 664
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 2 cut(s) 135, 836
Bst4CI ACNGT 3 cut(s) 52, 455, 525
Bst6I CTCTTC 1 cut(s) 736
BstBI TTCGAA 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 299, 399
BstDEI CTNAG 4 cut(s) 375, 549, 576, 707
BstF5I GGATG 3 cut(s) 227, 424, 760
BstKTI GATC 6 cut(s) 65, 112, 140, 145, 202, 667
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 6 cut(s) 62, 109, 137, 142, 199, 664
BstMWI GCNNNNNNNGC 2 cut(s) 298, 717
BstNI CCWGG 2 cut(s) 135, 836
BstNSI RCATGY 3 cut(s) 401, 592, 657
BstSCI CCNGG 3 cut(s) 133, 806, 834
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 16, 532, 815
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 3 cut(s) 248, 297, 816
BtsCI GGATG 3 cut(s) 227, 424, 760
BtsIMutI CAGTG 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 299, 399
Csp6I GTAC 2 cut(s) 27, 456
CviAII CATG 4 cut(s) 322, 398, 589, 654
CviQI GTAC 2 cut(s) 27, 456
DdeI CTNAG 4 cut(s) 375, 549, 576, 707
DpnI GATC 6 cut(s) 64, 111, 139, 144, 201, 666
DpnII GATC 6 cut(s) 62, 109, 137, 142, 199, 664
EaeI YGGCCR 2 cut(s) 295, 814
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 133, 834
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 4 cut(s) 325, 401, 592, 657
FatI CATG 4 cut(s) 321, 397, 588, 653
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 4 cut(s) 5, 246, 546, 804
FokI GGATG 3 cut(s) 214, 431, 767
Fsp4HI GCNGC 4 cut(s) 5, 246, 546, 804
FspBI CTAG 1 cut(s) 497
GluI GCNGC 4 cut(s) 5, 246, 546, 804
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 3 cut(s) 248, 297, 816
HapII CCGG 2 cut(s) 231, 807
Hin1II CATG 4 cut(s) 325, 401, 592, 657
HinfI GANTC 5 cut(s) 102, 124, 130, 476, 500
HpaII CCGG 2 cut(s) 231, 807
HphI GGTGA 2 cut(s) 64, 704
Hpy166II GTNNAC 2 cut(s) 646, 659
Hpy188I TCNGA 4 cut(s) 129, 142, 154, 850
Hpy188III TCNNGA 2 cut(s) 342, 518
Hpy8I GTNNAC 2 cut(s) 646, 659
HpyAV CCTTC 4 cut(s) 4, 37, 348, 560
HpyCH4III ACNGT 3 cut(s) 52, 455, 525
HpyCH4IV ACGT 2 cut(s) 458, 723
HpyCH4V TGCA 6 cut(s) 4, 221, 227, 383, 407, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 717
HpyF3I CTNAG 4 cut(s) 375, 549, 576, 707
HpySE526I ACGT 2 cut(s) 458, 723
Hsp92II CATG 4 cut(s) 325, 401, 592, 657
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 6 cut(s) 62, 109, 137, 142, 199, 664
LmnI GCTCC 1 cut(s) 717
Lsp1109I GCAGC 3 cut(s) 16, 532, 815
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 497
MaeII ACGT 2 cut(s) 458, 723
MaeIII GTNAC 1 cut(s) 187
MalI GATC 6 cut(s) 64, 111, 139, 144, 201, 666
MboI GATC 6 cut(s) 62, 109, 137, 142, 199, 664
MboII GAAGA 1 cut(s) 753
MflI RGATCY 1 cut(s) 142
MlsI TGGCCA 2 cut(s) 297, 816
MluCI AATT 1 cut(s) 675
MluNI TGGCCA 2 cut(s) 297, 816
MlyI GAGTC 3 cut(s) 111, 133, 139
MnlI CCTC 2 cut(s) 319, 409
Mox20I TGGCCA 2 cut(s) 297, 816
MscI TGGCCA 2 cut(s) 297, 816
MseI TTAA 2 cut(s) 471, 674
Msp20I TGGCCA 2 cut(s) 297, 816
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 2 cut(s) 231, 807
MspR9I CCNGG 3 cut(s) 135, 808, 836
MvaI CCWGG 2 cut(s) 135, 836
MwoI GCNNNNNNNGC 2 cut(s) 298, 717
NciI CCSGG 1 cut(s) 808
NdeII GATC 6 cut(s) 62, 109, 137, 142, 199, 664
NlaIII CATG 4 cut(s) 325, 401, 592, 657
NlaIV GGNNCC 3 cut(s) 336, 606, 840
NspI RCATGY 3 cut(s) 401, 592, 657
NspV TTCGAA 1 cut(s) 509
PaeI GCATGC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 476, 500
PflMI CCANNNNNTGG 1 cut(s) 823
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 4 cut(s) 6, 247, 547, 805
PleI GAGTC 3 cut(s) 110, 132, 138
PpsI GAGTC 3 cut(s) 110, 132, 138
PshBI ATTAAT 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 133, 834
PspGI CCWGG 2 cut(s) 133, 834
PspN4I GGNNCC 3 cut(s) 336, 606, 840
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 28, 457
RsaNI GTAC 2 cut(s) 27, 456
SaqAI TTAA 2 cut(s) 471, 674
SatI GCNGC 4 cut(s) 5, 246, 546, 804
Sau3AI GATC 6 cut(s) 62, 109, 137, 142, 199, 664
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 3 cut(s) 111, 133, 139
ScrFI CCNGG 3 cut(s) 135, 808, 836
SetI ASST 8 cut(s) 303, 381, 461, 547, 694, 713, 726, 840
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 798
SfuI TTCGAA 1 cut(s) 509
SphI GCATGC 1 cut(s) 401
Sse9I AATT 1 cut(s) 675
SsiI CCGC 2 cut(s) 7, 245
SspMI CTAG 1 cut(s) 497
StyD4I CCNGG 3 cut(s) 133, 806, 834
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 52, 455, 525
TaiI ACGT 2 cut(s) 461, 726
TaqI TCGA 2 cut(s) 509, 527
TaqII GACCGA 1 cut(s) 428
TasI AATT 1 cut(s) 675
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 476, 500
Tru1I TTAA 2 cut(s) 471, 674
Tru9I TTAA 2 cut(s) 471, 674
TscAI CASTG 1 cut(s) 635
TseI GCWGC 3 cut(s) 4, 545, 803
TspDTI ATGAA 4 cut(s) 71, 189, 522, 660
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 823
VspI ATTAAT 1 cut(s) 674
XceI RCATGY 3 cut(s) 401, 592, 657
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 1 cut(s) 497
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.