Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

66839669 .. 66842160

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21586

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAGCTTCGGGGCCGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCTCTACCTCCTGACATCACCGGCGTCACCGCTGGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGTCAGCTTTGGGCATGGGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCCCTTCTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

76

Amino Acids

7.72

Weight (kDa)

6.04

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	2 cut(s)	145, 204
AcyI	GRCGYC	2 cut(s)	69, 117
AfiI	CCNNNNNNNGG	2 cut(s)	64, 143
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	6, 167, 201
AluI	AGCT	3 cut(s)	6, 167, 201
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	2 cut(s)	84, 190
AoxI	GGCC	6 cut(s)	12, 55, 145, 180, 194, 204
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	6 cut(s)	12, 55, 88, 180, 195, 214
AsuHPI	GGTGA	2 cut(s)	103, 112
AvaI	CYCGRG	2 cut(s)	84, 190
AvaII	GGWCC	2 cut(s)	88, 214
BanII	GRGCYC	1 cut(s)	81
BceAI	ACGGC	2 cut(s)	132, 191
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	88, 214
BmeT110I	CYCGRG	2 cut(s)	84, 190
BmgT120I	GGNCC	6 cut(s)	12, 55, 88, 180, 195, 214
BmiI	GGNNCC	5 cut(s)	13, 89, 90, 181, 216
BmrFI	CCNGG	1 cut(s)	144
BsaHI	GRCGYC	2 cut(s)	69, 117
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	4 cut(s)	22, 58, 142, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 143
Bse118I	RCCGGY	2 cut(s)	14, 113
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	4 cut(s)	22, 58, 142, 207
BseLI	CCNNNNNNNGG	2 cut(s)	64, 143
BseX3I	CGGCCG	1 cut(s)	204
BseYI	CCCAGC	2 cut(s)	125, 197
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	6 cut(s)	14, 57, 147, 182, 196, 206
BsiEI	CGRYCG	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	84, 190
BsiSI	CCGG	2 cut(s)	15, 114
BslFI	GGGAC	2 cut(s)	74, 200
BslI	CCNNNNNNNGG	2 cut(s)	64, 143
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	74, 200
BsnI	GGCC	6 cut(s)	14, 57, 147, 182, 196, 206
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	2 cut(s)	84, 190
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	6 cut(s)	14, 57, 147, 182, 196, 206
BspLI	GGNNCC	5 cut(s)	13, 89, 90, 181, 216
BspTNI	GGTCTC	1 cut(s)	179
BsrFI	RCCGGY	2 cut(s)	14, 113
BssAI	RCCGGY	2 cut(s)	14, 113
BssECI	CCNNGG	4 cut(s)	22, 58, 142, 207
BssNI	GRCGYC	2 cut(s)	69, 117
BssT1I	CCWWGG	2 cut(s)	22, 58
Bst2UI	CCWGG	1 cut(s)	144
BstACI	GRCGYC	2 cut(s)	69, 117
BstC8I	GCNNGC	2 cut(s)	16, 38
BstDSI	CCRYGG	2 cut(s)	22, 207
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	179
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 33
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	6 cut(s)	14, 57, 147, 182, 196, 206
BtgI	CCRYGG	2 cut(s)	22, 207
Cac8I	GCNNGC	2 cut(s)	16, 38
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	2 cut(s)	14, 113
Cfr13I	GGNCC	6 cut(s)	12, 55, 88, 180, 195, 214
CseI	GACGC	2 cut(s)	77, 106
CviAII	CATG	2 cut(s)	23, 175
EaeI	YGGCCR	2 cut(s)	145, 204
EagI	CGGCCG	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	22, 58
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	88, 214
Eco52I	CGGCCG	1 cut(s)	204
Eco88I	CYCGRG	2 cut(s)	84, 190
EcoO109I	RGGNCCY	2 cut(s)	88, 214
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	22, 58
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	22, 58
FaeI	CATG	2 cut(s)	26, 178
FaiI	YATR	2 cut(s)	24, 176
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	2 cut(s)	74, 200
FatI	CATG	2 cut(s)	22, 174
FriOI	GRGCYC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	28
GsaI	CCCAGC	2 cut(s)	129, 201
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	6 cut(s)	14, 57, 147, 182, 196, 206
HapII	CCGG	2 cut(s)	15, 114
HgaI	GACGC	2 cut(s)	77, 106
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	2 cut(s)	69, 117
Hin1II	CATG	2 cut(s)	26, 178
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	2 cut(s)	15, 114
HphI	GGTGA	2 cut(s)	103, 112
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	158, 226
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	102, 153, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 33
Hsp92I	GRCGYC	2 cut(s)	69, 117
Hsp92II	CATG	2 cut(s)	26, 178
HspAI	GCGC	1 cut(s)	27
KflI	GGGWCCC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
LpnPI	CCDG	8 cut(s)	17, 28, 111, 117, 127, 129, 156, 211
MaeIII	GTNAC	2 cut(s)	118, 149
MhlI	GDGCHC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	111, 186, 199, 205
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	15, 114
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	24, 33
NaeI	GCCGGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	22
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	26, 178
NlaIV	GGNNCC	5 cut(s)	13, 89, 90, 181, 216
NmeAIII	GCCGAG	2 cut(s)	182, 208
NmuCI	GTSAC	2 cut(s)	118, 149
PaeR7I	CTCGAG	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	143
PpuMI	RGGWCCY	2 cut(s)	88, 214
Psp5II	RGGWCCY	2 cut(s)	88, 214
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	125, 197
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	5 cut(s)	13, 89, 90, 181, 216
PspPI	GGNCC	6 cut(s)	12, 55, 88, 180, 195, 214
PspPPI	RGGWCCY	2 cut(s)	88, 214
PspXI	VCTCGAGB	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	50
Sau96I	GGNCC	6 cut(s)	12, 55, 88, 180, 195, 214
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	8, 103, 164, 169, 191, 203, 216
Sfr274I	CTCGAG	1 cut(s)	190
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	88, 214
SlaI	CTCGAG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	22, 58
TaqI	TCGA	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	118, 149
Tsp45I	GTSAC	2 cut(s)	118, 149
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	88, 214
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 205
XhoI	CTCGAG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.