Rmu_sc0002313.1_g000018

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002313.1
OG0000878
Physical Location & Seq
Forward (+)
79781 .. 81226
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002313.1_g000018.1.cds

Sequence Viewer

Length: 465 bp
atggaccgttggcaatcgggtgctacacacaaatccattggtgtggacgcctacgagcccactcgggccccttctctacctcctgacatcaccggcgtcaccgccggggcattaccactccctggccgtcacttccgaaggtcagctttgggcatgggggccgagacctcgaggcccagctcggccgtggaggtccccttctccgagagtgctgagaccattgagggaaagcgtgtggttcactcgttcaagaactacaccaagctcgaaaatgtgggagctgagcattactactgtagatttgagtacaaggctgctactgaggcttttactcctgataagagttgctgtgtgagtttcgtggtctttgcgttatgcattgtctgttggttatgggaaatgtggtgtttgccgtataacccggatgatctcatggtgcagtgtgaggagtgcaaagactggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

154

Amino Acids

17.28

Weight (kDa)

5.35

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 122
AciI CCGC 1 cut(s) 102
AcoI YGGCCR 2 cut(s) 124, 183
AcyI GRCGYC 2 cut(s) 48, 96
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 146, 180, 265, 281
AluI AGCT 4 cut(s) 146, 180, 265, 281
Alw26I GTCTC 2 cut(s) 158, 209
Ama87I CYCGRG 2 cut(s) 63, 169
AoxI GGCC 5 cut(s) 66, 124, 159, 173, 183
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 314
AspS9I GGNCC 6 cut(s) 4, 66, 67, 159, 174, 193
AsuC2I CCSGG 2 cut(s) 106, 422
AsuHPI GGTGA 2 cut(s) 82, 91
AvaI CYCGRG 2 cut(s) 63, 169
AvaII GGWCC 2 cut(s) 4, 193
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 2 cut(s) 60, 70
BbvI GCAGC 1 cut(s) 301
BceAI ACGGC 3 cut(s) 111, 170, 397
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 2 cut(s) 106, 422
BcoDI GTCTC 2 cut(s) 158, 209
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 315
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 106, 123, 422
Bme18I GGWCC 2 cut(s) 4, 193
BmeT110I CYCGRG 2 cut(s) 63, 169
BmgT120I GGNCC 6 cut(s) 4, 66, 67, 159, 174, 193
BmiI GGNNCC 4 cut(s) 68, 69, 160, 195
BmrFI CCNGG 3 cut(s) 106, 123, 422
Bpu1102I GCTNAGC 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 106, 422
BsaHI GRCGYC 2 cut(s) 48, 96
BsaI GGTCTC 2 cut(s) 158, 209
BsaJI CCNNGG 3 cut(s) 105, 121, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 105, 121, 186
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 3 cut(s) 204, 273, 312
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 461
BseSI GKGCMC 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 5 cut(s) 68, 126, 161, 175, 185
BsiEI CGRYCG 1 cut(s) 186
BsiHKCI CYCGRG 2 cut(s) 63, 169
BsiSI CCGG 3 cut(s) 93, 105, 422
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 158, 209
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 5 cut(s) 68, 126, 161, 175, 185
Bso31I GGTCTC 2 cut(s) 158, 209
BsoBI CYCGRG 2 cut(s) 63, 169
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 60, 70
Bsp143I GATC 1 cut(s) 427
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 1 cut(s) 102
BspANI GGCC 5 cut(s) 68, 126, 161, 175, 185
BspCNI CTCAG 3 cut(s) 205, 274, 313
BspLI GGNNCC 4 cut(s) 68, 69, 160, 195
BspTNI GGTCTC 2 cut(s) 158, 209
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 105, 121, 186
BssMI GATC 1 cut(s) 427
BssNI GRCGYC 2 cut(s) 48, 96
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 8, 296
BstACI GRCGYC 2 cut(s) 48, 96
BstDEI CTNAG 3 cut(s) 213, 282, 321
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 1 cut(s) 430
BstMAI GTCTC 2 cut(s) 158, 209
BstMBI GATC 1 cut(s) 427
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 3 cut(s) 104, 121, 420
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 5 cut(s) 68, 126, 161, 175, 185
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 6 cut(s) 4, 66, 67, 159, 174, 193
CseI GACGC 2 cut(s) 56, 85
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 154, 433
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 213, 282, 321
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
EaeI YGGCCR 2 cut(s) 124, 183
EagI CGGCCG 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 183
Eco24I GRGCYC 2 cut(s) 60, 70
Eco31I GGTCTC 2 cut(s) 158, 209
Eco47I GGWCC 2 cut(s) 4, 193
Eco52I CGGCCG 1 cut(s) 183
Eco88I CYCGRG 2 cut(s) 63, 169
EcoO109I RGGNCCY 2 cut(s) 67, 193
EcoRII CCWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 2 cut(s) 60, 70
FaeI CATG 2 cut(s) 157, 436
FaiI YATR 5 cut(s) 155, 376, 394, 417, 434
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 153, 432
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 2 cut(s) 60, 70
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 5 cut(s) 68, 126, 161, 175, 185
HapII CCGG 3 cut(s) 93, 105, 422
HgaI GACGC 2 cut(s) 56, 85
Hin1I GRCGYC 2 cut(s) 48, 96
Hin1II CATG 2 cut(s) 157, 436
HpaII CCGG 3 cut(s) 93, 105, 422
HphI GGTGA 2 cut(s) 82, 91
Hpy166II GTNNAC 2 cut(s) 46, 241
Hpy188I TCNGA 2 cut(s) 137, 205
Hpy188III TCNNGA 3 cut(s) 83, 250, 335
Hpy8I GTNNAC 2 cut(s) 46, 241
HpyAV CCTTC 3 cut(s) 81, 132, 208
HpyCH4III ACNGT 2 cut(s) 8, 296
HpyCH4V TGCA 3 cut(s) 378, 439, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 3 cut(s) 213, 282, 321
Hsp92I GRCGYC 2 cut(s) 48, 96
Hsp92II CATG 2 cut(s) 157, 436
Kzo9I GATC 1 cut(s) 427
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 9 cut(s) 96, 106, 108, 118, 135, 190, 348, 435, 445
Lsp1109I GCAGC 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 97, 128
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 60, 70
MnlI CCTC 7 cut(s) 90, 165, 178, 184, 217, 316, 439
Mph1103I ATGCAT 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 3 cut(s) 93, 105, 422
MspR9I CCNGG 3 cut(s) 106, 123, 422
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 2 cut(s) 106, 422
NdeII GATC 1 cut(s) 427
NlaIII CATG 2 cut(s) 157, 436
NlaIV GGNNCC 4 cut(s) 68, 69, 160, 195
NmeAIII GCCGAG 2 cut(s) 161, 187
NmuCI GTSAC 2 cut(s) 97, 128
NsiI ATGCAT 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 4 cut(s) 68, 69, 160, 195
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 6 cut(s) 4, 66, 67, 159, 174, 193
PspPPI RGGWCCY 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 169
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 427
Sau96I GGNCC 6 cut(s) 4, 66, 67, 159, 174, 193
ScrFI CCNGG 3 cut(s) 106, 123, 422
SduI GDGCHC 2 cut(s) 60, 70
SetI ASST 8 cut(s) 82, 143, 148, 170, 182, 195, 267, 283
SfcI CTRYAG 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 169
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 2 cut(s) 4, 193
SlaI CTCGAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 104, 121, 420
TaaI ACNGT 2 cut(s) 8, 296
TaqI TCGA 2 cut(s) 170, 267
TatI WGTACW 1 cut(s) 306
TscAI CASTG 1 cut(s) 446
TseFI GTSAC 2 cut(s) 97, 128
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 2 cut(s) 97, 128
TspRI CASTG 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 4, 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.