Rmu_sc0004821.1_g000018

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004821.1
OG0000878
Physical Location & Seq
Reverse (-)
81057 .. 81407
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004821.1_g000018.1.cds

Sequence Viewer

Length: 240 bp
atgtctgatcactatgatgttcagagtgctaacaccattgagggaaagcgtgtggttcactcgttcaagaactacaccaagctcgaaaatgtgggagctgagcattactactgtagatttgagtacaaggttgctactggggcttttactcctgatagagttgctatgtattgcaagtctgagatgccgtataacccggatgacctcatggtgcggtgtgaggagtgcaaagactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

79

Amino Acids

9.21

Weight (kDa)

5.5

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 2 cut(s) 82, 98
AluI AGCT 2 cut(s) 82, 98
AsuC2I CCSGG 1 cut(s) 197
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 90, 171
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 197
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 91, 172
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 99, 180
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 208
CviJI RGCY 3 cut(s) 82, 98, 143
CviKI_1 RGCY 3 cut(s) 82, 98, 143
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 99, 180
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
FaeI CATG 1 cut(s) 211
FaiI YATR 4 cut(s) 15, 167, 192, 209
FatI CATG 1 cut(s) 207
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 212
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 211
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 7, 24, 181
Hpy188III TCNNGA 2 cut(s) 67, 152
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 174, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 99, 180
Hsp92II CATG 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 123, 165, 210
LweI GCATC 1 cut(s) 174
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 34, 214, 215
MseI TTAA 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 211
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 238
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 197
SetI ASST 4 cut(s) 84, 100, 132, 207
SfaNI GCATC 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 15
SsiI CCGC 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 84
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.