Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

7185670 .. 7186769

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCATGAGCACCAGAACAGCTGTGATGAGCTTCGGCGACGGCAACCACGGCGCTCTGGGGTTACCCACGTCCTTAATGGGCCTGGTGTCGACGCCTACGAGCCCACACGGGTCCCTTCTCTCCCTTCCGACATCACCGCCGTCACCGCCGGCCATTATCACTCCCTGGCGGTCACCTCTCAAGGTCAGCTTTGGGCCTGGGGAAGAGACCTCGAGGCCCAGCTCGGCCGTGGTGGTCCTTCTCCCAGAGATTCGTGGAATGAACCGAGGAGAGTAACGGGATTGGATCGAGTAAATGTGTGTTCTGCATTTGCGTCTGGTGTCATTTCTGCGGCTATTGGAGATGATGGTTCTCTGTGGGTTTGGGGAAAGTCGAAGCGTGGCCAGCTTGGTCTGGGAGAGCAAGTCATGGAGGCTGTGGTGCCTTCCCGAGTTGAAGCGCTTGCCGGTGAGAAAATTACTAAGGTTGCACTTGGTTGGGGGCATGCTCTTGCATTGACTGAGGATGGAAAGTTGTTTGGTTGGGGTTATTTTGCTGACGGTAGGATTAAAGAATTTTTGGAGACTTCTCAACTGGAATCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

196

Amino Acids

21.16

Weight (kDa)

6.3

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	29 - 184	7.1e-37	RCC1-like domain
RCC1_2	PF13540	45 - 70	6.5e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	61 - 113	1.3e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	116 - 166	4e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	153 - 180	4.4e-09	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	4 cut(s)	138, 147, 170, 332
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	3 cut(s)	151, 226, 382
AcsI	RAATTY	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	93
AfeI	AGCGCT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	437
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	3 cut(s)	82, 165, 197
AluBI	AGCT	5 cut(s)	21, 31, 190, 223, 388
AluI	AGCT	5 cut(s)	21, 31, 190, 223, 388
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	201, 557
AlwI	GGATC	1 cut(s)	294
Ama87I	CYCGRG	2 cut(s)	212, 429
Aor51HI	AGCGCT	1 cut(s)	441
AoxI	GGCC	6 cut(s)	80, 151, 195, 216, 226, 382
ApoI	RAATTY	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	54, 442
AspS9I	GGNCC	5 cut(s)	80, 112, 195, 217, 236
AsuHPI	GGTGA	4 cut(s)	127, 136, 166, 461
AvaI	CYCGRG	2 cut(s)	212, 429
AvaII	GGWCC	2 cut(s)	112, 236
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	2 cut(s)	341, 500
BceAI	ACGGC	4 cut(s)	56, 65, 125, 213
BciT130I	CCWGG	3 cut(s)	84, 167, 199
BcoDI	GTCTC	2 cut(s)	201, 557
BfoI	RGCGCY	2 cut(s)	55, 443
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	3 cut(s)	84, 167, 199
Bme18I	GGWCC	2 cut(s)	112, 236
BmeT110I	CYCGRG	2 cut(s)	212, 429
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	5 cut(s)	80, 112, 195, 217, 236
BmiI	GGNNCC	3 cut(s)	113, 114, 423
BmrFI	CCNGG	3 cut(s)	84, 167, 199
BpuEI	CTTGAG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	5 cut(s)	47, 165, 198, 229, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bse118I	RCCGGY	2 cut(s)	149, 446
Bse1I	ACTGG	1 cut(s)	579
BseBI	CCWGG	3 cut(s)	84, 167, 199
BseDI	CCNNGG	5 cut(s)	47, 165, 198, 229, 266
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	283
BseX3I	CGGCCG	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	6 cut(s)	82, 153, 197, 218, 228, 384
BshNI	GGYRCC	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	2 cut(s)	212, 429
BsiSI	CCGG	2 cut(s)	150, 447
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	201, 557
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	6 cut(s)	82, 153, 197, 218, 228, 384
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	2 cut(s)	212, 429
Bsp1286I	GDGCHC	2 cut(s)	12, 105
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	4 cut(s)	138, 147, 170, 332
BspANI	GGCC	6 cut(s)	82, 153, 197, 218, 228, 384
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	113, 114, 423
BspPI	GGATC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	149, 446
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	2 cut(s)	149, 446
BssECI	CCNNGG	5 cut(s)	47, 165, 198, 229, 266
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	84, 167, 199
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	4 cut(s)	151, 386, 444, 486
BstDEI	CTNAG	2 cut(s)	462, 501
BstDSI	CCRYGG	2 cut(s)	47, 229
BstEII	GGTNACC	2 cut(s)	61, 172
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	2 cut(s)	55, 443
BstHHI	GCGC	2 cut(s)	54, 442
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	201, 557
BstMBI	GATC	1 cut(s)	286
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 146, 385
BstNI	CCWGG	3 cut(s)	84, 167, 199
BstNSI	RCATGY	1 cut(s)	488
BstPI	GGTNACC	2 cut(s)	61, 172
BstSCI	CCNGG	3 cut(s)	82, 165, 197
BstZI	CGGCCG	1 cut(s)	226
BsuRI	GGCC	6 cut(s)	82, 153, 197, 218, 228, 384
BtgI	CCRYGG	2 cut(s)	47, 229
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	511
Cac8I	GCNNGC	4 cut(s)	151, 386, 444, 486
CfoI	GCGC	2 cut(s)	54, 442
Cfr10I	RCCGGY	2 cut(s)	149, 446
Cfr13I	GGNCC	5 cut(s)	80, 112, 195, 217, 236
CseI	GACGC	2 cut(s)	101, 303
CviAII	CATG	3 cut(s)	5, 409, 485
DdeI	CTNAG	2 cut(s)	462, 501
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	3 cut(s)	151, 226, 382
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	112, 236
Eco47III	AGCGCT	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	226
Eco88I	CYCGRG	2 cut(s)	212, 429
Eco91I	GGTNACC	2 cut(s)	61, 172
EcoO109I	RGGNCCY	1 cut(s)	112
EcoO65I	GGTNACC	2 cut(s)	61, 172
EcoRII	CCWGG	3 cut(s)	82, 165, 197
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	8, 412, 488
FaiI	YATR	3 cut(s)	6, 410, 486
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	4, 408, 484
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	333
GlaI	GCGC	2 cut(s)	53, 441
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	223
HaeII	RGCGCY	2 cut(s)	55, 443
HaeIII	GGCC	6 cut(s)	82, 153, 197, 218, 228, 384
HapII	CCGG	2 cut(s)	150, 447
HgaI	GACGC	2 cut(s)	101, 303
HhaI	GCGC	2 cut(s)	54, 442
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	8, 412, 488
Hin6I	GCGC	2 cut(s)	52, 440
HinP1I	GCGC	2 cut(s)	52, 440
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	251, 578
HpaII	CCGG	2 cut(s)	150, 447
HphI	GGTGA	4 cut(s)	127, 136, 166, 461
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	429
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	42, 95
HpyAV	CCTTC	4 cut(s)	126, 135, 249, 435
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	4 cut(s)	4, 308, 470, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 146, 385
HpyF3I	CTNAG	2 cut(s)	462, 501
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	8, 412, 488
HspAI	GCGC	2 cut(s)	52, 440
KflI	GGGWCCC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	4 cut(s)	61, 142, 172, 274
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	12, 105
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	2 cut(s)	456, 554
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	6 cut(s)	187, 208, 221, 261, 406, 496
Mox20I	TGGCCA	1 cut(s)	384
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	2 cut(s)	75, 549
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	2 cut(s)	150, 447
MspR9I	CCNGG	3 cut(s)	84, 167, 199
MvaI	CCWGG	3 cut(s)	84, 167, 199
MwoI	GCNNNNNNNGC	3 cut(s)	49, 146, 385
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	8, 412, 488
NlaIV	GGNNCC	3 cut(s)	113, 114, 423
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	142, 172
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	251, 578
PkrI	GCNGC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	3 cut(s)	82, 165, 197
PspEI	GGTNACC	2 cut(s)	61, 172
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	3 cut(s)	82, 165, 197
PspN4I	GGNNCC	3 cut(s)	113, 114, 423
PspPI	GGNCC	5 cut(s)	80, 112, 195, 217, 236
PspPPI	RGGWCCY	1 cut(s)	112
PspXI	VCTCGAGB	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	75, 549
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	5 cut(s)	80, 112, 195, 217, 236
ScrFI	CCNGG	3 cut(s)	84, 167, 199
SduI	GDGCHC	2 cut(s)	12, 105
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	2 cut(s)	112, 236
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	180, 212
SmoI	CTYRAG	2 cut(s)	180, 212
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	2 cut(s)	456, 554
SsiI	CCGC	4 cut(s)	138, 147, 170, 332
StyD4I	CCNGG	3 cut(s)	82, 165, 197
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	90, 213, 289, 374
TasI	AATT	2 cut(s)	456, 554
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	251, 578
Tru1I	TTAA	2 cut(s)	75, 549
Tru9I	TTAA	2 cut(s)	75, 549
TseFI	GTSAC	2 cut(s)	142, 172
Tsp45I	GTSAC	2 cut(s)	142, 172
TspDTI	ATGAA	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	112, 236
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 227
XhoI	CTCGAG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.