Rh2AG144800

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000878
Physical Location & Seq
Forward (+)
13218641 .. 13219254
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG144800.1

Sequence Viewer

Length: 528 bp
ATGTTGTTTACTTCAAAAGATGGAAGTTTTTGGAGCACAAATGTTCTGTGGCAGGATGCACTTGGTTGGGGGCATGTTCTTGCATTGACTGAGGATGGAAAGTTATTTGGTTGGGGTTATTTTGCTGATGGTAGGTTAGGAAGCATTAAAGAATCTCTGGAGACATCTCAACTGGAATCTACTTCCAATAATCAAGAACTGTCGAGTTCGTCTTTGGAAGCTGATGAGAAGCTGGTTTTAGAAGGAATGGCCAAGGAGAATAACATGCCAATAGTTTGGGAACCCAGTTTAGTGAGGGAACTACAGTGTATTGAAGTTGTAGACATTGCATGTGGTCTTGATCATTCATTAATTCTTTGTGGTGATGGGACACTACTGAGCTGTGGGAGCAGTGTATATGGTCAGTTGGGAAGAGAAAAACAGGATGTAGGATTGTTTCCTATGATATATGCTTCCGTCCAATGTCTATGGCAGCCGGGCTTGGCCATTCTTTGGCAATTTGCCAGGTTGCATCATCAGATGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

175

Amino Acids

19.38

Weight (kDa)

4.54

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 20 - 148 1.5e-17 RCC1-like domain
RCC1_2 PF13540 20 - 43 3.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 106 - 135 3.8e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 492
AccI GTMKAC 1 cut(s) 321
AcoI YGGCCR 2 cut(s) 249, 483
AfiI CCNNNNNNNGG 1 cut(s) 492
AgsI TTSAA 2 cut(s) 15, 314
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 3 cut(s) 221, 232, 381
AluI AGCT 3 cut(s) 221, 232, 381
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 2 cut(s) 249, 483
ApeKI GCWGC 1 cut(s) 472
AseI ATTAAT 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 374
BalI TGGCCA 2 cut(s) 251, 485
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 484
BccI CCATC 4 cut(s) 14, 89, 122, 359
BciT130I CCWGG 1 cut(s) 505
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 2 cut(s) 477, 505
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 477, 505
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 46, 520
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 2 cut(s) 177, 285
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 3 cut(s) 61, 100, 430
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 81, 368
BseNI ACTGG 2 cut(s) 177, 285
BseXI GCAGC 1 cut(s) 484
BshFI GGCC 2 cut(s) 251, 485
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 251, 485
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 340
BspANI GGCC 2 cut(s) 251, 485
BspCNI CTCAG 2 cut(s) 82, 369
BspLI GGNNCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 2 cut(s) 177, 285
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 201, 306
Bst6I CTCTTC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 90, 377
BstF5I GGATG 3 cut(s) 61, 100, 430
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 3 cut(s) 77, 268, 333
BstSCI CCNGG 2 cut(s) 475, 503
BstSFI CTRYAG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 276
BsuRI GGCC 2 cut(s) 251, 485
BtsCI GGATG 3 cut(s) 61, 100, 430
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 311, 397
CviAII CATG 3 cut(s) 74, 265, 330
CviJI RGCY 7 cut(s) 221, 232, 251, 381, 475, 480, 485
CviKI_1 RGCY 7 cut(s) 221, 232, 251, 381, 475, 480, 485
DdeI CTNAG 2 cut(s) 90, 377
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
EaeI YGGCCR 2 cut(s) 249, 483
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 77, 268, 333
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 73, 264, 329
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 3 cut(s) 68, 107, 437
Fsp4HI GCNGC 1 cut(s) 473
GluI GCNGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 251, 485
HapII CCGG 1 cut(s) 476
Hin1II CATG 3 cut(s) 77, 268, 333
HinfI GANTC 2 cut(s) 152, 176
HpaII CCGG 1 cut(s) 476
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 9, 322
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 3 cut(s) 158, 194, 338
Hpy8I GTNNAC 2 cut(s) 9, 322
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 201, 306
HpyCH4V TGCA 4 cut(s) 59, 83, 329, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 2 cut(s) 90, 377
Hsp92II CATG 3 cut(s) 77, 268, 333
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 2 cut(s) 33, 387
LpnPI CCDG 9 cut(s) 38, 143, 158, 218, 298, 407, 489, 490, 517
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 2 cut(s) 46, 520
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 251, 485
MluCI AATT 2 cut(s) 351, 497
MluNI TGGCCA 2 cut(s) 251, 485
MnlI CCTC 2 cut(s) 85, 288
Mox20I TGGCCA 2 cut(s) 251, 485
MscI TGGCCA 2 cut(s) 251, 485
MseI TTAA 2 cut(s) 147, 350
Msp20I TGGCCA 2 cut(s) 251, 485
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 477, 505
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 1 cut(s) 387
NciI CCSGG 1 cut(s) 477
NdeII GATC 1 cut(s) 340
NlaIII CATG 3 cut(s) 77, 268, 333
NlaIV GGNNCC 1 cut(s) 282
NspI RCATGY 3 cut(s) 77, 268, 333
PfeI GAWTC 2 cut(s) 152, 176
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 1 cut(s) 474
PshBI ATTAAT 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 147, 350
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 477, 505
SduI GDGCHC 1 cut(s) 38
SetI ASST 5 cut(s) 137, 223, 234, 383, 509
SfaNI GCATC 2 cut(s) 46, 520
SfcI CTRYAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 351, 497
StyD4I CCNGG 2 cut(s) 475, 503
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 201, 306
TaqI TCGA 1 cut(s) 203
TasI AATT 2 cut(s) 351, 497
TfiI GAWTC 2 cut(s) 152, 176
Tru1I TTAA 2 cut(s) 147, 350
Tru9I TTAA 2 cut(s) 147, 350
TscAI CASTG 2 cut(s) 311, 397
TseI GCWGC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 2 cut(s) 311, 397
Van91I CCANNNNNTGG 1 cut(s) 492
VspI ATTAAT 1 cut(s) 350
XceI RCATGY 3 cut(s) 77, 268, 333
XmiI GTMKAC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.