Rh7DG479200

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000878
Physical Location & Seq
Forward (+)
68436000 .. 68436684
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG479200.1

Sequence Viewer

Length: 261 bp
ATGACCCCCACAACAGCTGCCATGAGCTTCGGGGACGGCAAGCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACTCGGGTCCCTTCTCTACCTCCTGACATCACCGGCGTCACCGCCGGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGTCAGCTTTGGGCATGGGCCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGAGATTCGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

86

Amino Acids

9.09

Weight (kDa)

11.16

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 1 cut(s) 144
AcoI YGGCCR 2 cut(s) 166, 224
AcyI GRCGYC 2 cut(s) 90, 138
AfiI CCNNNNNNNGG 2 cut(s) 85, 164
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 4 cut(s) 17, 27, 188, 221
AluI AGCT 4 cut(s) 17, 27, 188, 221
Alw26I GTCTC 1 cut(s) 199
Ama87I CYCGRG 3 cut(s) 105, 202, 210
AoxI GGCC 5 cut(s) 76, 166, 199, 214, 224
ApaI GGGCCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 6 cut(s) 76, 109, 199, 200, 215, 234
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 124, 133
AvaI CYCGRG 3 cut(s) 105, 202, 210
AvaII GGWCC 2 cut(s) 109, 234
BaeGI GKGCMC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 102, 203
BbvI GCAGC 1 cut(s) 4
BceAI ACGGC 3 cut(s) 52, 153, 211
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 148, 165
Bme18I GGWCC 2 cut(s) 109, 234
BmeT110I CYCGRG 3 cut(s) 105, 202, 210
BmgT120I GGNCC 6 cut(s) 76, 109, 199, 200, 215, 234
BmiI GGNNCC 3 cut(s) 110, 111, 201
BmrFI CCNGG 2 cut(s) 148, 165
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 2 cut(s) 90, 138
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 4 cut(s) 79, 147, 163, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 164
Bse118I RCCGGY 1 cut(s) 134
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 79, 147, 163, 227
BseLI CCNNNNNNNGG 2 cut(s) 85, 164
BseSI GKGCMC 1 cut(s) 203
BseX3I CGGCCG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 5 cut(s) 78, 168, 201, 216, 226
BsiEI CGRYCG 1 cut(s) 227
BsiHKCI CYCGRG 3 cut(s) 105, 202, 210
BsiSI CCGG 2 cut(s) 135, 147
BslFI GGGAC 2 cut(s) 47, 95
BslI CCNNNNNNNGG 2 cut(s) 85, 164
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 47, 95
BsnI GGCC 5 cut(s) 78, 168, 201, 216, 226
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 3 cut(s) 105, 202, 210
Bsp120I GGGCCC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 102, 203
BspACI CCGC 1 cut(s) 144
BspANI GGCC 5 cut(s) 78, 168, 201, 216, 226
BspLI GGNNCC 3 cut(s) 110, 111, 201
BspTNI GGTCTC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 79, 147, 163, 227
BssNI GRCGYC 2 cut(s) 90, 138
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 165
BstACI GRCGYC 2 cut(s) 90, 138
BstC8I GCNNGC 2 cut(s) 41, 59
BstDSI CCRYGG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 45, 54
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 146, 163
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 224
BsuRI GGCC 5 cut(s) 78, 168, 201, 216, 226
BtgI CCRYGG 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 41, 59
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 6 cut(s) 76, 109, 199, 200, 215, 234
CseI GACGC 2 cut(s) 98, 127
CviAII CATG 3 cut(s) 22, 44, 196
EaeI YGGCCR 2 cut(s) 166, 224
EagI CGGCCG 1 cut(s) 224
EclXI CGGCCG 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 102, 203
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 109, 234
Eco52I CGGCCG 1 cut(s) 224
Eco88I CYCGRG 3 cut(s) 105, 202, 210
EcoO109I RGGNCCY 2 cut(s) 109, 234
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 102, 203
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 25, 47, 199
FaiI YATR 3 cut(s) 23, 45, 197
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 2 cut(s) 47, 95
FatI CATG 3 cut(s) 21, 43, 195
Fnu4HI GCNGC 1 cut(s) 18
FriOI GRGCYC 2 cut(s) 102, 203
Fsp4HI GCNGC 1 cut(s) 18
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 5 cut(s) 78, 168, 201, 216, 226
HapII CCGG 2 cut(s) 135, 147
HgaI GACGC 2 cut(s) 98, 127
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 2 cut(s) 90, 138
Hin1II CATG 3 cut(s) 25, 47, 199
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 1 cut(s) 249
HpaII CCGG 2 cut(s) 135, 147
HphI GGTGA 2 cut(s) 124, 133
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 179, 244
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 123, 174, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 54
Hsp92I GRCGYC 2 cut(s) 90, 138
Hsp92II CATG 3 cut(s) 25, 47, 199
HspAI GCGC 1 cut(s) 48
KflI GGGWCCC 1 cut(s) 109
LpnPI CCDG 7 cut(s) 38, 138, 148, 150, 160, 177, 231
Lsp1109I GCAGC 1 cut(s) 4
MaeIII GTNAC 2 cut(s) 139, 170
MhlI GDGCHC 2 cut(s) 102, 203
MnlI CCTC 4 cut(s) 132, 206, 219, 225
MseI TTAA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 135, 147
MspR9I CCNGG 2 cut(s) 148, 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 45, 54
NciI CCSGG 1 cut(s) 148
NlaIII CATG 3 cut(s) 25, 47, 199
NlaIV GGNNCC 3 cut(s) 110, 111, 201
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 139, 170
PaeR7I CTCGAG 1 cut(s) 210
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 1 cut(s) 19
PpuMI RGGWCCY 2 cut(s) 109, 234
Psp5II RGGWCCY 2 cut(s) 109, 234
Psp6I CCWGG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 110, 111, 201
PspOMI GGGCCC 1 cut(s) 199
PspPI GGNCC 6 cut(s) 76, 109, 199, 200, 215, 234
PspPPI RGGWCCY 2 cut(s) 109, 234
PspXI VCTCGAGB 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 18
Sau96I GGNCC 6 cut(s) 76, 109, 199, 200, 215, 234
ScrFI CCNGG 2 cut(s) 148, 165
SduI GDGCHC 2 cut(s) 102, 203
SetI ASST 8 cut(s) 19, 29, 124, 185, 190, 211, 223, 236
Sfr274I CTCGAG 1 cut(s) 210
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 109, 234
SlaI CTCGAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SsiI CCGC 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 146, 163
StyI CCWWGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 211
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 2 cut(s) 139, 170
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 139, 170
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 109, 234
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 225
XhoI CTCGAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.