Rorug07G0339600

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000574
Physical Location & Seq
Forward (+)
37381463 .. 37387597
6135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0339600.1

Sequence Viewer

Length: 501 bp
ATGGGCAAGCCTGGTTCACGTCAAGACTTGTCGACCAAAGCCGACCGCAAATTCGAAAAGAAGCTCGATTTCTATGCTAAGGTTAGAGATACAGTTTCTACCTTGAGTACCCAGAAAACTATTGTTAAGAAGAAGAAACTCCGTAGCCGGCAGAAGAAACTGAAAGCATATGATCTCTCTGCCCTAACAGAGTTCCTGCCGGAGTTGAAGGGTGAACAGAAGCCAACTCCTCCATCAGACTTAAAGCGAAATTGTAAATCTATGCGAAAGCTAATATTGAAGGAAGGAAAGCAGTTGACTACAGTTCTTAATCATCCTGCCTTCCAGTCGGATGCCTTAGCTGCCATTCATCAACACTTAGAGAGGACACAGCCAGTGAGAGAGGAGGAAAAACCAGAGAAAAGGAAAAACAAATGCGGAAGCAAGAAGAGGAAAGGTGGAAGCAAGAAGAAAGGGATGAAATCTGAAGGTCCATCTGTACCCCAATCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

166

Amino Acids

18.89

Weight (kDa)

10.21

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 10 - 123 7.1e-10 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 46, 417
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 2 cut(s) 109, 480
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 2 cut(s) 208, 280
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 3 cut(s) 64, 271, 341
AluI AGCT 3 cut(s) 64, 271, 341
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 241, 481
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 470
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 322
Bpu10I CCTNAGC 2 cut(s) 78, 337
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 325, 374
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 313, 337, 462
BseLI CCNNNNNNNGG 1 cut(s) 490
BseNI ACTGG 2 cut(s) 325, 374
BseRI GAGGAG 2 cut(s) 219, 398
BseXI GCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 148, 200
BslI CCNNNNNNNGG 1 cut(s) 490
Bsp119I TTCGAA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 46, 417
BspT104I TTCGAA 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 2 cut(s) 325, 374
BssAI RCCGGY 1 cut(s) 147
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 94, 304
Bst6I CTCTTC 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 8, 149
BstDEI CTNAG 3 cut(s) 78, 337, 358
BstF5I GGATG 3 cut(s) 313, 337, 462
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 328
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 3 cut(s) 313, 337, 462
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 8, 149
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 108, 479
CviJI RGCY 8 cut(s) 10, 41, 64, 147, 223, 271, 341, 373
CviKI_1 RGCY 8 cut(s) 10, 41, 64, 147, 223, 271, 341, 373
CviQI GTAC 2 cut(s) 108, 479
DdeI CTNAG 3 cut(s) 78, 337, 358
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 10
FaiI YATR 6 cut(s) 75, 169, 171, 263, 491, 497
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 3 cut(s) 300, 344, 469
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
HapII CCGG 2 cut(s) 148, 200
HincII GTYRAC 2 cut(s) 33, 297
HindII GTYRAC 2 cut(s) 33, 297
HpaII CCGG 2 cut(s) 148, 200
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 4 cut(s) 17, 33, 215, 297
Hpy188I TCNGA 3 cut(s) 238, 331, 466
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 4 cut(s) 17, 33, 215, 297
HpyAV CCTTC 5 cut(s) 202, 274, 278, 331, 461
HpyCH4III ACNGT 2 cut(s) 94, 304
HpyCH4IV ACGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 3 cut(s) 78, 337, 358
HpySE526I ACGT 1 cut(s) 19
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 24, 125, 161, 209, 213, 330, 338, 387, 408
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 322
MaeII ACGT 1 cut(s) 19
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 5 cut(s) 142, 145, 166, 439, 460
MluCI AATT 2 cut(s) 50, 250
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 240, 357, 376, 379, 423
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 3 cut(s) 126, 242, 309
MspI CCGG 2 cut(s) 148, 200
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 341
NaeI GCCGGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 147
NspV TTCGAA 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 1 cut(s) 470
RsaI GTAC 2 cut(s) 109, 480
RsaNI GTAC 2 cut(s) 108, 479
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 126, 242, 309
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 12
SetI ASST 8 cut(s) 22, 66, 84, 104, 273, 343, 439, 472
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 50, 250
SsiI CCGC 2 cut(s) 46, 417
SspI AATATT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 94, 304
TaiI ACGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 32, 54, 66
TasI AATT 2 cut(s) 50, 250
Tru1I TTAA 3 cut(s) 126, 242, 309
Tru9I TTAA 3 cut(s) 126, 242, 309
TscAI CASTG 1 cut(s) 381
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 338, 473
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.