Rh1CG258200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000574
Physical Location & Seq
Reverse (-)
52291778 .. 52323968
32191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG258200.1

Sequence Viewer

Length: 414 bp
ATGGCAGCCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTCCCCGCTTACACTGTCAACTTTCGAGTTGTGAGGATGTTTTCAGGTTTGATCTCAATTGCTTCACTGCTCGCGCTTCTGCTTCCCGACTCTTGGGAGCATGTACCATATTACATGTTGTTCATGTCATATTGGGTGAGCCGAGGGTTTGGGTTTCTCCGAATGATGTATGGATTGGTTTACCGACGAGTTGTGGAGGAACTTCTTCAAAAGTTATGGTTATTCATCCATTACCGTCAACGAGCCCCAAGAACTGGTGAGCTCTTGCCATTTACAGTTGTGGATACACATGATCGCACGTCGATCCGTGGGCTCTTGCCATTGACGGTCATGGATATGCATGATCGCATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

16.21

Weight (kDa)

9.69

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 63
AclWI GGATC 1 cut(s) 355
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 150, 311
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 1 cut(s) 357
AluBI AGCT 2 cut(s) 18, 319
AluI AGCT 2 cut(s) 18, 319
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 1 cut(s) 355
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 40, 133
AsuHPI GGTGA 2 cut(s) 205, 326
BanII GRGCYC 3 cut(s) 304, 321, 372
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 17
BciVI GTATCC 1 cut(s) 334
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 41
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 199, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 311
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 199, 364
BseGI GGATG 2 cut(s) 99, 282
BseLI CCNNNNNNNGG 2 cut(s) 150, 311
BseMI GCAATG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 150, 311
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 304, 321, 372
Bsp143I GATC 4 cut(s) 108, 349, 360, 400
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 47
BspFNI CGCG 1 cut(s) 131
BspPI GGATC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 9
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 199, 364
BssMI GATC 4 cut(s) 108, 349, 360, 400
Bst4CI ACNGT 4 cut(s) 73, 293, 334, 385
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 16, 20, 36, 129
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 99, 282
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 133
BstKTI GATC 4 cut(s) 111, 352, 363, 403
BstMBI GATC 4 cut(s) 108, 349, 360, 400
BstMWI GCNNNNNNNGC 2 cut(s) 11, 44
BstNSI RCATGY 2 cut(s) 161, 175
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 17
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 364
BtrI CACGTC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 99, 282
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 69, 122
Cac8I GCNNGC 4 cut(s) 16, 20, 36, 129
CfoI GCGC 2 cut(s) 40, 133
Csp6I GTAC 1 cut(s) 161
CviAII CATG 7 cut(s) 49, 158, 172, 181, 347, 388, 398
CviJI RGCY 8 cut(s) 8, 18, 34, 47, 198, 302, 319, 370
CviKI_1 RGCY 8 cut(s) 8, 18, 34, 47, 198, 302, 319, 370
CviQI GTAC 1 cut(s) 161
DpnI GATC 4 cut(s) 110, 351, 362, 402
DpnII GATC 4 cut(s) 108, 349, 360, 400
Ecl136II GAGCTC 1 cut(s) 319
Eco24I GRGCYC 3 cut(s) 304, 321, 372
Eco53kI GAGCTC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 3 cut(s) 304, 321, 372
FaeI CATG 7 cut(s) 52, 161, 175, 184, 350, 391, 401
FatI CATG 7 cut(s) 48, 157, 171, 180, 346, 387, 397
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 106, 269
FriOI GRGCYC 3 cut(s) 304, 321, 372
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 41
GlaI GCGC 2 cut(s) 39, 132
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 2 cut(s) 40, 133
Hin1II CATG 7 cut(s) 52, 161, 175, 184, 350, 391, 401
Hin6I GCGC 2 cut(s) 38, 131
HinP1I GCGC 2 cut(s) 38, 131
HincII GTYRAC 2 cut(s) 76, 296
HindII GTYRAC 2 cut(s) 76, 296
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 2 cut(s) 57, 146
HphI GGTGA 2 cut(s) 205, 326
Hpy166II GTNNAC 3 cut(s) 76, 238, 296
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 3 cut(s) 76, 238, 296
Hpy99I CGWCG 2 cut(s) 246, 361
HpyCH4III ACNGT 4 cut(s) 73, 293, 334, 385
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 14, 52, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 44
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 7 cut(s) 52, 161, 175, 184, 350, 391, 401
HspAI GCGC 2 cut(s) 38, 131
Kzo9I GATC 4 cut(s) 108, 349, 360, 400
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 20, 87, 297
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 356
MalI GATC 4 cut(s) 110, 351, 362, 402
MboI GATC 4 cut(s) 108, 349, 360, 400
MboII GAAGA 1 cut(s) 254
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 3 cut(s) 304, 321, 372
MluCI AATT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 4 cut(s) 37, 84, 194, 247
Mph1103I ATGCAT 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 392
MunI CAATTG 1 cut(s) 114
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 11, 44
NdeII GATC 4 cut(s) 108, 349, 360, 400
NlaIII CATG 7 cut(s) 52, 161, 175, 184, 350, 391, 401
NmeAIII GCCGAG 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 2 cut(s) 161, 175
PciI ACATGT 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 321
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 392
SacI GAGCTC 1 cut(s) 321
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 108, 349, 360, 400
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 3 cut(s) 304, 321, 372
SetI ASST 4 cut(s) 20, 106, 321, 359
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 321
TaaI ACNGT 4 cut(s) 73, 293, 334, 385
TaiI ACGT 1 cut(s) 359
TaqI TCGA 2 cut(s) 82, 359
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 57
TscAI CASTG 2 cut(s) 76, 129
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 169, 271
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 2 cut(s) 76, 129
Van91I CCANNNNNTGG 1 cut(s) 311
XceI RCATGY 2 cut(s) 161, 175
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.