Rh5DG481400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000574
Physical Location & Seq
Forward (+)
75891450 .. 75892563
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG481400.1

Sequence Viewer

Length: 522 bp
ATGTCTCTCCCCCATTCTAGTCCCCAGCCCTCATTCAACATTTTGGTCATCATCAATCAACAAGGGATTGCTGCTGCTGCTCCACCTCCTCCTTCCACTTCAACTTCCACTCATGCCATTTTTGTTTTCATCATCACCGTGTTCGTCTCCTTTGTGCAAATCAGGTTCCCAGAAACTCAGTCCTCTTCACCATTTGAAACACATCACCCAACCATCATGGTTTTCTTTGCTAGCTTAATTTCGTATTGCTCATCTCTTTGGGCCACGAAAAGATTTCCTAGTTACGTCTATCTTTTTCGTGTTACAATGAGATCTGCTGGTCTACTCGCACTAGCTTCATTGCTTTCACTTCTTCTTCCTGGCTCCTGTCACCGTGTGCCATACATGATCCTAATCTTCTATTTCATTGTGGAGTGTTTTCAGTTGCTCCCAATGCCATGTCAATTGACTTACTCGCAAGCCATTCATGGATCTGTGTCACGCATTCGTTGTGGTCGGACACGTGCACTATTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.27

Weight (kDa)

9.6

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 322
AclWI GGATC 2 cut(s) 382, 478
AcvI CACGTG 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 500
AgsI TTSAA 3 cut(s) 37, 102, 197
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 2 cut(s) 234, 335
AluI AGCT 2 cut(s) 234, 335
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 2 cut(s) 9, 151
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 2 cut(s) 382, 478
AoxI GGCC 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 3 cut(s) 71, 74, 77
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 4 cut(s) 127, 180, 197, 362
AsuNHI GCTAGC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 508
BbrPI CACGTG 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 3 cut(s) 58, 61, 64
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 9, 151
BfaI CTAG 4 cut(s) 18, 231, 279, 332
BglII AGATCT 1 cut(s) 311
BisI GCNGC 3 cut(s) 72, 75, 78
BlsI GCNGC 3 cut(s) 73, 76, 79
Bme1390I CCNGG 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 167, 364
BmrFI CCNGG 1 cut(s) 360
BmtI GCTAGC 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 1 cut(s) 360
BseJI GATNNNNATC 1 cut(s) 392
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 3 cut(s) 58, 61, 64
BseYI CCCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 508
BslFI GGGAC 1 cut(s) 6
BsmAI GTCTC 2 cut(s) 9, 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 6
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 3 cut(s) 311, 387, 470
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 167, 364
BspOI GCTAGC 1 cut(s) 234
BspPI GGATC 2 cut(s) 382, 478
BsrDI GCAATG 1 cut(s) 338
BssMI GATC 3 cut(s) 311, 387, 470
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 3 cut(s) 139, 374, 519
Bst6I CTCTTC 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 232, 459
BstDEI CTNAG 1 cut(s) 177
BstKTI GATC 3 cut(s) 314, 390, 473
BstMAI GTCTC 2 cut(s) 9, 151
BstMBI GATC 3 cut(s) 311, 387, 470
BstMWI GCNNNNNNNGC 2 cut(s) 77, 433
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 58, 61, 64
BstX2I RGATCY 2 cut(s) 311, 470
BstYI RGATCY 2 cut(s) 311, 470
BsuRI GGCC 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 2 cut(s) 232, 459
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 5 cut(s) 113, 217, 385, 438, 467
CviJI RGCY 6 cut(s) 28, 234, 263, 335, 363, 461
CviKI_1 RGCY 6 cut(s) 28, 234, 263, 335, 363, 461
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 313, 389, 472
DpnII GATC 3 cut(s) 311, 387, 470
DraIII CACNNNGTG 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco72I CACGTG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 5 cut(s) 116, 220, 388, 441, 470
FaiI YATR 6 cut(s) 114, 218, 382, 386, 439, 468
FaqI GGGAC 1 cut(s) 6
FatI CATG 5 cut(s) 112, 216, 384, 437, 466
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 72, 75, 78
Fsp4HI GCNGC 3 cut(s) 72, 75, 78
FspBI CTAG 4 cut(s) 18, 231, 279, 332
GluI GCNGC 3 cut(s) 72, 75, 78
GsaI CCCAGC 1 cut(s) 28
HaeIII GGCC 1 cut(s) 263
Hin1II CATG 5 cut(s) 116, 220, 388, 441, 470
HphI GGTGA 4 cut(s) 127, 180, 197, 362
Hpy166II GTNNAC 2 cut(s) 323, 506
Hpy188I TCNGA 1 cut(s) 498
Hpy8I GTNNAC 2 cut(s) 323, 506
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 139, 374, 519
HpyCH4IV ACGT 2 cut(s) 285, 502
HpyCH4V TGCA 2 cut(s) 157, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 433
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 2 cut(s) 285, 502
Hsp92II CATG 5 cut(s) 116, 220, 388, 441, 470
Kzo9I GATC 3 cut(s) 311, 387, 470
LmnI GCTCC 3 cut(s) 85, 368, 432
LpnPI CCDG 7 cut(s) 38, 148, 183, 303, 345, 372, 379
Lsp1109I GCAGC 3 cut(s) 58, 61, 64
MaeI CTAG 4 cut(s) 18, 231, 279, 332
MaeII ACGT 2 cut(s) 285, 502
MaeIII GTNAC 4 cut(s) 281, 301, 368, 477
MalI GATC 3 cut(s) 313, 389, 472
MboI GATC 3 cut(s) 311, 387, 470
MboII GAAGA 4 cut(s) 177, 344, 347, 388
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 2 cut(s) 311, 470
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 2 cut(s) 237, 443
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 4 cut(s) 40, 96, 99, 193
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 360
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 77, 433
NdeII GATC 3 cut(s) 311, 387, 470
NheI GCTAGC 1 cut(s) 230
NlaIII CATG 5 cut(s) 116, 220, 388, 441, 470
NlaIV GGNNCC 2 cut(s) 167, 364
NmuCI GTSAC 2 cut(s) 368, 477
PctI GAATGC 1 cut(s) 483
PkrI GCNGC 3 cut(s) 73, 76, 79
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 358
PspCI CACGTG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 167, 364
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 2 cut(s) 311, 470
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 3 cut(s) 72, 75, 78
Sau3AI GATC 3 cut(s) 311, 387, 470
Sau96I GGNCC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 508
SetI ASST 6 cut(s) 88, 167, 236, 288, 337, 505
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 2 cut(s) 237, 443
SspMI CTAG 4 cut(s) 18, 231, 279, 332
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 139, 374, 519
TaiI ACGT 2 cut(s) 288, 505
TasI AATT 2 cut(s) 237, 443
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 2 cut(s) 368, 477
TseI GCWGC 3 cut(s) 71, 74, 77
Tsp45I GTSAC 2 cut(s) 368, 477
TspDTI ATGAA 4 cut(s) 118, 327, 394, 455
TspRI CASTG 1 cut(s) 522
VneI GTGCAC 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 4 cut(s) 18, 231, 279, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.