RLG00000000617

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000574
Physical Location & Seq
Forward (+)
2650089 .. 2650661
573 bp
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UTR
Exon/CDS
Intron
RLM00000000617

Sequence Viewer

Length: 573 bp
ATGGCCAGTTTTCTCCGTCAATGGATACTCTCGGTCTTTTTACCACGTGAACAAGCGGCCCCTTCCCCCTTCGCCATTTTCACTTTCATGGTGCCGACACTTCTGACCTTCATCCAGATTAAATACCCTGCTCTCGAAACTCTATCTCTCCCATTTGAAACCCACCACACCGAGTTCATGGTTGCCATTCTCAGCTTACGTGCCTTCTGTTGCTTTGCCATTGGAGCCGCCCAAAACTTCTTCCCAAATCACGCTCCAAAACTTTTTATGGCTGTCAAGTGTACGGCCTCGCTCTCGGTGGCTTCGCTTGTGTCGCTTTTGCTTCCACAGCCTTGGGACCAAGTGCCGTATGTGACCTACTTCTTGTATGCATGCCACTGTCTCGGCTTGCTCAGAAATATTAATCTGGCTTATTACCACGACATCGCTTATGGATTTGTGCGTAGCTCACGCGCCCGTCTACAGCAGTTGAGACAAACGCGCCGCCCACCGTTGCCTCTGACAGTCAGAGATATCTCCAACCACCCGATTGCCAACCGTCCATCAATCACTGAAGTCAGAACAGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.67

Weight (kDa)

9.62

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 460
AccII CGCG 2 cut(s) 453, 481
AciI CCGC 3 cut(s) 56, 228, 484
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 47
AfaI GTAC 1 cut(s) 283
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 2 cut(s) 195, 447
AluI AGCT 2 cut(s) 195, 447
Alw26I GTCTC 2 cut(s) 386, 466
AoxI GGCC 3 cut(s) 3, 57, 285
AseI ATTAAT 1 cut(s) 402
AspLEI GCGC 2 cut(s) 455, 483
AspS9I GGNCC 2 cut(s) 58, 337
AvaII GGWCC 1 cut(s) 337
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 91
BbrPI CACGTG 1 cut(s) 47
BccI CCATC 1 cut(s) 550
BceAI ACGGC 2 cut(s) 300, 331
BciVI GTATCC 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 386, 466
BfmI CTRYAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 3 cut(s) 57, 228, 484
BlsI GCNGC 3 cut(s) 58, 229, 485
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 2 cut(s) 58, 337
BmiI GGNNCC 4 cut(s) 60, 93, 226, 338
BsaAI YACGTR 2 cut(s) 47, 200
BsaJI CCNNGG 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 205, 406
BseNI ACTGG 1 cut(s) 6
Bsh1236I CGCG 2 cut(s) 453, 481
BshFI GGCC 3 cut(s) 5, 59, 287
BshNI GGYRCC 1 cut(s) 91
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 386, 466
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 3 cut(s) 5, 59, 287
BspACI CCGC 3 cut(s) 56, 228, 484
BspANI GGCC 3 cut(s) 5, 59, 287
BspCNI CTCAG 2 cut(s) 204, 405
BspFNI CGCG 2 cut(s) 453, 481
BspLI GGNNCC 4 cut(s) 60, 93, 226, 338
BspT107I GGYRCC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 332
Bst4CI ACNGT 5 cut(s) 380, 492, 505, 539, 565
BstBAI YACGTR 2 cut(s) 47, 200
BstC8I GCNNGC 2 cut(s) 373, 389
BstDEI CTNAG 2 cut(s) 191, 392
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 453, 481
BstHHI GCGC 2 cut(s) 455, 483
BstMAI GTCTC 2 cut(s) 386, 466
BstMWI GCNNNNNNNGC 3 cut(s) 224, 313, 328
BstNSI RCATGY 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 461
BstUI CGCG 2 cut(s) 453, 481
BstXI CCANNNNNNTGG 1 cut(s) 333
BsuI GTATCC 1 cut(s) 18
BsuRI GGCC 3 cut(s) 5, 59, 287
BtgZI GCGATG 1 cut(s) 409
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 376, 549
Cac8I GCNNGC 2 cut(s) 373, 389
CfoI GCGC 2 cut(s) 455, 483
Cfr13I GGNCC 2 cut(s) 58, 337
Csp6I GTAC 1 cut(s) 282
CviAII CATG 3 cut(s) 88, 178, 372
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 2 cut(s) 191, 392
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 332
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 47
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 3 cut(s) 91, 181, 375
FaiI YATR 7 cut(s) 89, 179, 269, 351, 369, 373, 432
FaqI GGGAC 1 cut(s) 350
FatI CATG 3 cut(s) 87, 177, 371
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 57, 228, 484
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 3 cut(s) 57, 228, 484
GlaI GCGC 2 cut(s) 454, 482
GluI GCNGC 3 cut(s) 57, 228, 484
HaeIII GGCC 3 cut(s) 5, 59, 287
HhaI GCGC 2 cut(s) 455, 483
Hin1II CATG 3 cut(s) 91, 181, 375
Hin6I GCGC 2 cut(s) 453, 481
HinP1I GCGC 2 cut(s) 453, 481
Hpy166II GTNNAC 4 cut(s) 50, 282, 461, 568
Hpy188I TCNGA 5 cut(s) 105, 395, 501, 509, 560
Hpy188III TCNNGA 2 cut(s) 115, 134
Hpy8I GTNNAC 4 cut(s) 50, 282, 461, 568
HpyAV CCTTC 4 cut(s) 72, 79, 118, 214
HpyCH4III ACNGT 5 cut(s) 380, 492, 505, 539, 565
HpyCH4IV ACGT 2 cut(s) 46, 199
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 313, 328
HpyF3I CTNAG 2 cut(s) 191, 392
HpySE526I ACGT 2 cut(s) 46, 199
Hsp92II CATG 3 cut(s) 91, 181, 375
HspAI GCGC 2 cut(s) 453, 481
LmnI GCTCC 2 cut(s) 224, 259
LpnPI CCDG 4 cut(s) 19, 128, 141, 392
MaeII ACGT 2 cut(s) 46, 199
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 2 cut(s) 298, 507
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 373
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 120, 402
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 2 cut(s) 453, 481
MwoI GCNNNNNNNGC 3 cut(s) 224, 313, 328
NlaIII CATG 3 cut(s) 91, 181, 375
NlaIV GGNNCC 4 cut(s) 60, 93, 226, 338
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 375
PaeI GCATGC 1 cut(s) 375
PkrI GCNGC 3 cut(s) 58, 229, 485
PmaCI CACGTG 1 cut(s) 47
PmlI CACGTG 1 cut(s) 47
Ppu21I YACGTR 2 cut(s) 47, 200
PshBI ATTAAT 1 cut(s) 402
PspCI CACGTG 1 cut(s) 47
PspN4I GGNNCC 4 cut(s) 60, 93, 226, 338
PspPI GGNCC 2 cut(s) 58, 337
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 2 cut(s) 120, 402
SatI GCNGC 3 cut(s) 57, 228, 484
Sau96I GGNCC 2 cut(s) 58, 337
SetI ASST 6 cut(s) 49, 110, 197, 202, 359, 449
SfcI CTRYAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 86
SphI GCATGC 1 cut(s) 375
SsiI CCGC 3 cut(s) 56, 228, 484
SspI AATATT 1 cut(s) 400
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 5 cut(s) 380, 492, 505, 539, 565
TaiI ACGT 2 cut(s) 49, 202
TaqI TCGA 1 cut(s) 135
TaqII GACCGA 1 cut(s) 22
TauI GCSGC 3 cut(s) 59, 230, 486
Tru1I TTAA 2 cut(s) 120, 402
Tru9I TTAA 2 cut(s) 120, 402
TscAI CASTG 2 cut(s) 383, 556
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 76, 100, 166
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 2 cut(s) 383, 556
VpaK11BI GGWCC 1 cut(s) 337
VspI ATTAAT 1 cut(s) 402
XceI RCATGY 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 460
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.