Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Forward (+)

7184477 .. 7185109

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13031.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCCGATTTCCGGTATCAATGGCCACCCTCAGTTTTATCACGTGAACATTACAATATCGTCCTCATCTTCAACGCTGTTCTACTAGATTTGGAAAGACAAGCGGCCCCTTCCTCCTTCGCCATCGTCACTTTCATGGTGTCAACACTTCTCACCTTCATCCAGATCAAATTCCCGGCCACCGAAACACCATCTTTCCCATTTGATACCCACCACACCAAGTTCATGGTTGCCATGCTCAGCTTACTTGGCTACTGTTTCTTCGCCATAGGGGCTTCTCAAGACTACTGGTTCCCAACTCACACTCGCAAATTACGCATGGCTATGAAGCTTACAGCTTCCCTTTTGGTCGCTTCCCTCGTCTCACTGCTGCTTCCCAAGCCTTGGGACCGCGTGCCGTACGTGACCTACTTCTTGTACTTTACAGGCCACGGTCTCGGTTTTGTCAGAGATGAACATCTGGCTTACTATCACCGCGTTGTTGATGGATTCGTTCGTATCTTACGCGCGCTTCACCGGAGGTTGAGAGTAACGCGCCCGCCGTTGCCGGTGACTGTCAGTGTGCCCAATATCTCCAACCAGCCAATTGCGAACCGTAGATCAATCATGGAAGTCAGAACATTCCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.33

Weight (kDa)

10.11

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccII	CGCG	5 cut(s)	393, 477, 507, 509, 535
AciI	CCGC	4 cut(s)	104, 391, 475, 539
AcoI	YGGCCR	3 cut(s)	3, 23, 177
AcsI	RAATTY	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	401, 419
AfiI	CCNNNNNNNGG	2 cut(s)	12, 384
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	3 cut(s)	243, 331, 338
AluI	AGCT	3 cut(s)	243, 331, 338
Alw26I	GTCTC	2 cut(s)	367, 440
AoxI	GGCC	5 cut(s)	3, 23, 105, 177, 427
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	509, 511, 537
AspS9I	GGNCC	2 cut(s)	106, 388
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	145, 464, 506, 562
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	131, 199, 479
BceAI	ACGGC	2 cut(s)	382, 526
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	367, 440
BfaI	CTAG	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	105, 371
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	106, 372
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	106, 388
BmiI	GGNNCC	3 cut(s)	108, 293, 389
BmrFI	CCNGG	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	176
BsaAI	YACGTR	2 cut(s)	44, 403
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	383, 430
BsaWI	WCCGGW	2 cut(s)	12, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 384
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	293, 628
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	383, 430
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	12, 384
BseMII	CTCAG	2 cut(s)	45, 253
BseNI	ACTGG	2 cut(s)	293, 628
BsePI	GCGCGC	1 cut(s)	507
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	357
Bsh1236I	CGCG	5 cut(s)	393, 477, 507, 509, 535
BshFI	GGCC	5 cut(s)	5, 25, 107, 179, 429
BsiSI	CCGG	4 cut(s)	13, 176, 517, 548
BsiWI	CGTACG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	12, 384
BsmAI	GTCTC	2 cut(s)	367, 440
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	5 cut(s)	5, 25, 107, 179, 429
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	165, 599
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	4 cut(s)	104, 391, 475, 539
BspANI	GGCC	5 cut(s)	5, 25, 107, 179, 429
BspCNI	CTCAG	2 cut(s)	44, 252
BspFNI	CGCG	5 cut(s)	393, 477, 507, 509, 535
BspLI	GGNNCC	3 cut(s)	108, 293, 389
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	293, 628
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	383, 430
BssHII	GCGCGC	1 cut(s)	507
BssMI	GATC	2 cut(s)	165, 599
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	4 cut(s)	257, 434, 556, 596
BstBAI	YACGTR	2 cut(s)	44, 403
BstC8I	GCNNGC	3 cut(s)	395, 509, 539
BstDEI	CTNAG	2 cut(s)	31, 239
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	5 cut(s)	393, 477, 507, 509, 535
BstHHI	GCGC	3 cut(s)	509, 511, 537
BstKTI	GATC	2 cut(s)	168, 602
BstMAI	GTCTC	2 cut(s)	367, 440
BstMBI	GATC	2 cut(s)	165, 599
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 272, 315, 379
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	5 cut(s)	393, 477, 507, 509, 535
BstV1I	GCAGC	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	5 cut(s)	5, 25, 107, 179, 429
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	2 cut(s)	365, 565
Cac8I	GCNNGC	3 cut(s)	395, 509, 539
CfoI	GCGC	3 cut(s)	509, 511, 537
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	106, 388
Csp6I	GTAC	2 cut(s)	400, 418
CviAII	CATG	5 cut(s)	136, 226, 235, 319, 607
CviQI	GTAC	2 cut(s)	400, 418
DdeI	CTNAG	2 cut(s)	31, 239
DpnI	GATC	2 cut(s)	167, 601
DpnII	GATC	2 cut(s)	165, 599
EaeI	YGGCCR	3 cut(s)	3, 23, 177
Eco130I	CCWWGG	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	388
Eco72I	CACGTG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	5 cut(s)	139, 229, 238, 322, 610
FaiI	YATR	7 cut(s)	137, 227, 236, 269, 320, 326, 608
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	135, 225, 234, 318, 606
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	105, 371
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	105, 371
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	3 cut(s)	508, 510, 536
GluI	GCNGC	2 cut(s)	105, 371
HaeIII	GGCC	5 cut(s)	5, 25, 107, 179, 429
HapII	CCGG	4 cut(s)	13, 176, 517, 548
HhaI	GCGC	3 cut(s)	509, 511, 537
Hin1II	CATG	5 cut(s)	139, 229, 238, 322, 610
Hin6I	GCGC	3 cut(s)	507, 509, 535
HinP1I	GCGC	3 cut(s)	507, 509, 535
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	489
HpaII	CCGG	4 cut(s)	13, 176, 517, 548
HphI	GGTGA	4 cut(s)	145, 464, 506, 562
Hpy166II	GTNNAC	2 cut(s)	47, 144
Hpy188I	TCNGA	2 cut(s)	449, 617
Hpy188III	TCNNGA	2 cut(s)	163, 281
Hpy8I	GTNNAC	2 cut(s)	47, 144
HpyAV	CCTTC	3 cut(s)	120, 127, 166
HpyCH4III	ACNGT	4 cut(s)	257, 434, 556, 596
HpyCH4IV	ACGT	2 cut(s)	43, 402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 272, 315, 379
HpyF3I	CTNAG	2 cut(s)	31, 239
HpySE526I	ACGT	2 cut(s)	43, 402
Hsp92II	CATG	5 cut(s)	139, 229, 238, 322, 610
HspAI	GCGC	3 cut(s)	507, 509, 535
Kzo9I	GATC	2 cut(s)	165, 599
LpnPI	CCDG	9 cut(s)	26, 176, 189, 274, 411, 446, 530, 561, 593
Lsp1109I	GCAGC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	43, 402
MaeIII	GTNAC	4 cut(s)	127, 403, 529, 550
MalI	GATC	2 cut(s)	167, 601
MboI	GATC	2 cut(s)	165, 599
MboII	GAAGA	2 cut(s)	61, 253
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	3 cut(s)	170, 311, 585
MluNI	TGGCCA	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	5 cut(s)	40, 74, 124, 368, 513
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MslI	CAYNNNNRTG	2 cut(s)	134, 323
Msp20I	TGGCCA	1 cut(s)	25
MspI	CCGG	4 cut(s)	13, 176, 517, 548
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	585
MvnI	CGCG	5 cut(s)	393, 477, 507, 509, 535
MwoI	GCNNNNNNNGC	4 cut(s)	249, 272, 315, 379
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	165, 599
NlaIII	CATG	5 cut(s)	139, 229, 238, 322, 610
NlaIV	GGNNCC	3 cut(s)	108, 293, 389
NmuCI	GTSAC	3 cut(s)	127, 403, 550
PauI	GCGCGC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 539
PfeI	GAWTC	1 cut(s)	489
Pfl23II	CGTACG	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	106, 372
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
Ppu21I	YACGTR	2 cut(s)	44, 403
PspCI	CACGTG	1 cut(s)	44
PspLI	CGTACG	1 cut(s)	399
PspN4I	GGNNCC	3 cut(s)	108, 293, 389
PspPI	GGNCC	2 cut(s)	106, 388
PteI	GCGCGC	1 cut(s)	507
RsaI	GTAC	2 cut(s)	401, 419
RsaNI	GTAC	2 cut(s)	400, 418
RseI	CAYNNNNRTG	2 cut(s)	134, 323
SatI	GCNGC	2 cut(s)	105, 371
Sau3AI	GATC	2 cut(s)	165, 599
Sau96I	GGNCC	2 cut(s)	106, 388
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	8 cut(s)	46, 158, 245, 333, 340, 405, 410, 524
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	134, 323
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	3 cut(s)	170, 311, 585
SsiI	CCGC	4 cut(s)	104, 391, 475, 539
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	4 cut(s)	257, 434, 556, 596
TaiI	ACGT	2 cut(s)	46, 405
TasI	AATT	3 cut(s)	170, 311, 585
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	489
TscAI	CASTG	2 cut(s)	372, 565
TseFI	GTSAC	3 cut(s)	127, 403, 550
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	3 cut(s)	127, 403, 550
TspDTI	ATGAA	5 cut(s)	124, 148, 214, 341, 468
TspRI	CASTG	2 cut(s)	372, 565
Van91I	CCANNNNNTGG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.