FvH4_3g38201

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000574
Physical Location & Seq
Forward (+)
32620687 .. 32621256
570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38201.t1

Sequence Viewer

Length: 570 bp
ATGTCTTTCCTACTCTATCCCACAACACAAATCTCAACCTTCATTTCCACCAGAGCTGGTCAGCAATGCCGCCAGCCAGAATTCAACATTCTGGTACTGATGATCAATCATGGAGAAAGGCCAGCTACTCCTTCCAGTTCCACTCGGATTCCAACTTCAACTTCCGCTCATGCCATTTTCGCTTTCACTGTTGCTGTACTCGTTTCCTTCATCCAAATCAAGTTCCCAGGAACAGTAATCTCCTCCTCCCCGTTCGAAACACATCCTACCACCATCGTGGTTTTCATTGCTAGCTTATTTTCCTACTGCTCGTCTCTTTTGGCCACCAAAAGATCACCTGGTTATGCACCTACGTTTTGCATTGCCATGAGATCTTCTGGTTTACTCGCACTTGCTTCACTGCTTTCGCTTTTGTTGCCCGATTCTTATCACCACGGGCCATACTTGACGTTCATCTTCTATTTCGTGGTTGAGTGTTATCAATTGTTGCGCGTATCTATAGCAGGTCGAGCTCAGCAGGGACACACGCTGTTGCCGTTAACGGTCAGCGATTTGACTCCAATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

190

Amino Acids

20.68

Weight (kDa)

9.05

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
AccBSI CCGCTC 1 cut(s) 167
AccII CGCG 1 cut(s) 492
AciI CCGC 2 cut(s) 70, 165
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 2 cut(s) 96, 198
AgsI TTSAA 2 cut(s) 85, 159
AjnI CCWGG 2 cut(s) 226, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 4 cut(s) 56, 125, 294, 512
AluI AGCT 4 cut(s) 56, 125, 294, 512
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 1 cut(s) 318
AoxI GGCC 3 cut(s) 119, 321, 437
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 327, 422
AsuII TTCGAA 1 cut(s) 255
AsuNHI GCTAGC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 514
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 2 cut(s) 228, 339
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 494
BglII AGATCT 1 cut(s) 371
BisI GCNGC 1 cut(s) 70
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 228, 339
BmgT120I GGNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 228, 339
BmtI GCTAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 226, 433
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 3 cut(s) 71, 285, 360
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 2 cut(s) 228, 339
BseDI CCNNGG 2 cut(s) 226, 433
BseGI GGATG 2 cut(s) 210, 262
BseJI GATNNNNATC 1 cut(s) 426
BseMI GCAATG 3 cut(s) 71, 285, 360
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 232, 235
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 3 cut(s) 121, 323, 439
BsiHKAI GWGCWC 1 cut(s) 514
BslFI GGGAC 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 318
BsmBI CGTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 3 cut(s) 121, 323, 439
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 3 cut(s) 102, 332, 371
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 2 cut(s) 70, 165
BspANI GGCC 3 cut(s) 121, 323, 439
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 1 cut(s) 492
BspMI ACCTGC 1 cut(s) 494
BspOI GCTAGC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 3 cut(s) 71, 285, 360
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 226, 433
BssMI GATC 3 cut(s) 102, 332, 371
Bst2UI CCWGG 2 cut(s) 228, 339
Bst4CI ACNGT 3 cut(s) 190, 235, 544
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 74, 123, 292
BstDEI CTNAG 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 210, 262
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 3 cut(s) 105, 335, 374
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 102, 332, 371
BstMWI GCNNNNNNNGC 3 cut(s) 179, 415, 509
BstNI CCWGG 2 cut(s) 228, 339
BstSCI CCNGG 2 cut(s) 226, 337
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 3 cut(s) 121, 323, 439
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 2 cut(s) 210, 262
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 2 cut(s) 186, 398
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 3 cut(s) 74, 123, 292
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 437
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 2 cut(s) 95, 197
CviAII CATG 3 cut(s) 110, 170, 367
CviJI RGCY 8 cut(s) 56, 76, 121, 125, 294, 323, 439, 512
CviKI_1 RGCY 8 cut(s) 56, 76, 121, 125, 294, 323, 439, 512
CviQI GTAC 2 cut(s) 95, 197
DdeI CTNAG 1 cut(s) 513
DpnI GATC 3 cut(s) 104, 334, 373
DpnII GATC 3 cut(s) 102, 332, 371
EaeI YGGCCR 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 514
Eco53kI GAGCTC 1 cut(s) 512
EcoICRI GAGCTC 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 226, 337
EcoT38I GRGCYC 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 3 cut(s) 113, 173, 370
FaiI YATR 6 cut(s) 111, 171, 345, 368, 442, 500
FaqI GGGAC 1 cut(s) 534
FatI CATG 3 cut(s) 109, 169, 366
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 2 cut(s) 197, 249
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 3 cut(s) 121, 323, 439
HhaI GCGC 1 cut(s) 492
Hin1II CATG 3 cut(s) 113, 173, 370
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 3 cut(s) 148, 422, 556
HpaI GTTAAC 1 cut(s) 540
HphI GGTGA 2 cut(s) 327, 422
Hpy166II GTNNAC 2 cut(s) 383, 540
Hpy188I TCNGA 1 cut(s) 147
Hpy8I GTNNAC 2 cut(s) 383, 540
HpyAV CCTTC 3 cut(s) 49, 141, 217
HpyCH4III ACNGT 3 cut(s) 190, 235, 544
HpyCH4IV ACGT 2 cut(s) 353, 449
HpyCH4V TGCA 2 cut(s) 347, 360
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 415, 509
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 2 cut(s) 353, 449
Hsp92II CATG 3 cut(s) 113, 173, 370
HspAI GCGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 3 cut(s) 102, 332, 371
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 1 cut(s) 291
MaeII ACGT 2 cut(s) 353, 449
MalI GATC 3 cut(s) 104, 334, 373
MbiI CCGCTC 1 cut(s) 167
MboI GATC 3 cut(s) 102, 332, 371
MboII GAAGA 2 cut(s) 366, 448
MfeI CAATTG 1 cut(s) 482
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 514
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 3 cut(s) 80, 482, 565
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 550
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 2 cut(s) 253, 256
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 539
MslI CAYNNNNRTG 2 cut(s) 275, 365
Msp20I TGGCCA 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 228, 339
MunI CAATTG 1 cut(s) 482
MvaI CCWGG 2 cut(s) 228, 339
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 179, 415, 509
NdeII GATC 3 cut(s) 102, 332, 371
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 3 cut(s) 113, 173, 370
NspV TTCGAA 1 cut(s) 255
OliI CACNNNNGTG 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 2 cut(s) 148, 422
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 226, 337
PspGI CCWGG 2 cut(s) 226, 337
PspPI GGNCC 1 cut(s) 437
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 2 cut(s) 96, 198
RsaNI GTAC 2 cut(s) 95, 197
RseI CAYNNNNRTG 2 cut(s) 275, 365
SacI GAGCTC 1 cut(s) 514
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 3 cut(s) 102, 332, 371
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 2 cut(s) 228, 339
SduI GDGCHC 1 cut(s) 514
SexAI ACCWGGT 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 275, 365
Sse9I AATT 3 cut(s) 80, 482, 565
SsiI CCGC 2 cut(s) 70, 165
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 1 cut(s) 514
StyD4I CCNGG 2 cut(s) 226, 337
TaaI ACNGT 3 cut(s) 190, 235, 544
TaiI ACGT 2 cut(s) 356, 452
TaqI TCGA 2 cut(s) 255, 508
TasI AATT 3 cut(s) 80, 482, 565
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 148, 422
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 2 cut(s) 193, 405
TspDTI ATGAA 4 cut(s) 31, 199, 274, 442
TspRI CASTG 2 cut(s) 193, 405
XapI RAATTY 1 cut(s) 80
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.