Prupe.2G137400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000574
Physical Location & Seq
Forward (+)
19479724 .. 19481473
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G137400.1

Sequence Viewer

Length: 567 bp
ATGGAGAGCAGAGAGCAGCACCACCCAGCCTACCCAACTGGCTTCGCAGTTGGGAGACCTAGCAACAAAGTCTCCAAATGGCACCAGAAGAAAAGGAAAACGAAAAATAAGAGGTTAACGCAAGGATTCATTTCCTCAATGCCATGGCATACCATCTTTGCATTTCTGAATCCACTGCTAATCGGCATCCTTCAAGTGAAATGTCAAGGCGCAACCAAGTCTCCATTTGACACACACCAGGAAGTCATGTGGACATTTTTGCTGGCAACGTTAGTCTACTGCTTTGCATTTGCAGCTAACATGAAATCACGCCGTAATTGCTCTACAGTCTACTCTCGAATCTCTGGCCATTTTGCTCTTCTCACTGGATCTCTTTCCTCGGTCTCGTTGTTCTCCATCTTTCTTCCAAGGTTTCCTAATGAGCAGCTTGTTATCCTCTTGTGGATCATCATGCCTTTGATTGTTGCAAGAAAGTGGATCTGTCGAGCAACCCACTTTTTAGTTCACTGCATTTGTCGTGGCTTCTTCGGAAGAAACTTGATGGAGCAGCCACAATTGCCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.64

Weight (kDa)

10.39

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccI GTMKAC 2 cut(s) 276, 330
AclI AACGTT 1 cut(s) 269
AclWI GGATC 3 cut(s) 376, 452, 485
AcoI YGGCCR 1 cut(s) 346
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 2 cut(s) 296, 427
AluI AGCT 2 cut(s) 296, 427
Alw26I GTCTC 4 cut(s) 49, 76, 225, 388
AlwI GGATC 3 cut(s) 376, 452, 485
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 4 cut(s) 16, 293, 424, 547
AspLEI GCGC 1 cut(s) 212
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 28, 305, 436, 559
BccI CCATC 3 cut(s) 161, 404, 535
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 4 cut(s) 49, 76, 225, 388
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 4 cut(s) 17, 294, 425, 548
BlsI GCNGC 4 cut(s) 18, 295, 426, 549
Bme1390I CCNGG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 195
BsaI GGTCTC 2 cut(s) 49, 388
BsaJI CCNNGG 3 cut(s) 143, 378, 407
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 205, 235
Bse1I ACTGG 2 cut(s) 43, 370
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 143, 378, 407
BseGI GGATG 1 cut(s) 186
BseNI ACTGG 2 cut(s) 43, 370
BseXI GCAGC 4 cut(s) 28, 305, 436, 559
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 81
BsmAI GTCTC 4 cut(s) 49, 76, 225, 388
BsnI GGCC 1 cut(s) 348
Bso31I GGTCTC 2 cut(s) 49, 388
Bsp143I GATC 3 cut(s) 368, 444, 477
Bsp19I CCATGG 1 cut(s) 143
BspANI GGCC 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 3 cut(s) 376, 452, 485
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 2 cut(s) 49, 388
BsrI ACTGG 2 cut(s) 43, 370
BssECI CCNNGG 3 cut(s) 143, 378, 407
BssMI GATC 3 cut(s) 368, 444, 477
BssT1I CCWWGG 2 cut(s) 143, 407
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 371, 447, 480
BstMAI GTCTC 4 cut(s) 49, 76, 225, 388
BstMBI GATC 3 cut(s) 368, 444, 477
BstMWI GCNNNNNNNGC 3 cut(s) 293, 318, 556
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 28, 305, 436, 559
BstX2I RGATCY 2 cut(s) 368, 477
BstYI RGATCY 2 cut(s) 368, 477
BsuRI GGCC 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 2 cut(s) 173, 505
BtsIMutI CAGTG 3 cut(s) 173, 363, 505
Cac8I GCNNGC 1 cut(s) 264
CfoI GCGC 1 cut(s) 212
CviAII CATG 4 cut(s) 144, 247, 301, 451
CviJI RGCY 7 cut(s) 29, 42, 296, 348, 427, 522, 550
CviKI_1 RGCY 7 cut(s) 29, 42, 296, 348, 427, 522, 550
DpnI GATC 3 cut(s) 370, 446, 479
DpnII GATC 3 cut(s) 368, 444, 477
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 143, 407
Eco31I GGTCTC 2 cut(s) 49, 388
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 143, 407
ErhI CCWWGG 2 cut(s) 143, 407
FaeI CATG 4 cut(s) 147, 250, 304, 454
FaiI YATR 5 cut(s) 145, 150, 248, 302, 452
FatI CATG 4 cut(s) 143, 246, 300, 450
FblI GTMKAC 2 cut(s) 276, 330
Fnu4HI GCNGC 4 cut(s) 17, 294, 425, 548
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 17, 294, 425, 548
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 17, 294, 425, 548
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 348
HhaI GCGC 1 cut(s) 212
Hin1II CATG 4 cut(s) 147, 250, 304, 454
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 126, 169, 339
HpaI GTTAAC 1 cut(s) 117
Hpy166II GTNNAC 5 cut(s) 117, 252, 277, 331, 505
Hpy188I TCNGA 2 cut(s) 168, 530
Hpy188III TCNNGA 1 cut(s) 336
Hpy8I GTNNAC 5 cut(s) 117, 252, 277, 331, 505
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 161, 287, 293, 467, 510
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 318, 556
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 4 cut(s) 147, 250, 304, 454
HspAI GCGC 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 117
Kzo9I GATC 3 cut(s) 368, 444, 477
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 8 cut(s) 24, 39, 98, 224, 248, 251, 330, 351
Lsp1109I GCAGC 4 cut(s) 28, 305, 436, 559
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 269
MalI GATC 3 cut(s) 370, 446, 479
MboI GATC 3 cut(s) 368, 444, 477
MboII GAAGA 5 cut(s) 100, 350, 395, 517, 543
MfeI CAATTG 1 cut(s) 554
MflI RGATCY 2 cut(s) 368, 477
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 2 cut(s) 316, 554
MluNI TGGCCA 1 cut(s) 348
MnlI CCTC 4 cut(s) 105, 145, 388, 446
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 554
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 293, 318, 556
NcoI CCATGG 1 cut(s) 143
NdeII GATC 3 cut(s) 368, 444, 477
NlaIII CATG 4 cut(s) 147, 250, 304, 454
NlaIV GGNNCC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 126, 169, 339
PkrI GCNGC 4 cut(s) 18, 295, 426, 549
Psp1406I AACGTT 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 83
PsuI RGATCY 2 cut(s) 368, 477
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 4 cut(s) 17, 294, 425, 548
Sau3AI GATC 3 cut(s) 368, 444, 477
ScrFI CCNGG 1 cut(s) 239
SetI ASST 6 cut(s) 61, 116, 272, 298, 413, 429
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 2 cut(s) 316, 554
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 2 cut(s) 143, 407
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 337, 484
TaqII GACCGA 1 cut(s) 370
TasI AATT 2 cut(s) 316, 554
TfiI GAWTC 3 cut(s) 126, 169, 339
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 3 cut(s) 180, 370, 512
TseI GCWGC 4 cut(s) 16, 293, 424, 547
TspDTI ATGAA 2 cut(s) 118, 317
TspRI CASTG 3 cut(s) 180, 370, 512
XmiI GTMKAC 2 cut(s) 276, 330
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.