Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

13890382 .. 13892179

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1115400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGAGCAGAGAGCGCCGTGCTGACTTCGCGGTTTGGAGATCTAGCAGCAGCAGCAATAAAGTCTCCAAATGGAATCATATCAAGCTCAGAAGGAAAACAAAAAATAAGAGGTTGAAAGGGTTTATTTCCTCAATGCCATGGCATGCCATCTTTGCATTTCTGAATCCACTGCTAATCGGCGTCCTTCAAGTGAAATGTCAAGGTGCAAACGTCTCCCCATTCGACACGCACCCAAGAGTCATGTGGATATTTTTGTCGACAACGTTAGTCTACTGCTTTGCATTTGCAGCTAACATAAAATCACGCCGTAACTGCACTACCATATTCTACTCTCGAATGTCCGGTCATATTGCTCTACTCACCGGCTCTCTTTCTTCAGTCTCTTTAGTCTCCATCTTCTTTCCAAGCGTACTTGATGAGCGACTTGTTTTCTTCTCTTGGATCATTATGCCTTTGATTGTTGGAAGAACGTTGATTCGTCGAATGTGTCAAAATATTTGCAAATCTACGATGAATGCAGTCATCATAGTTTATAGCATATGGCAGGGGTTTGCAAGAAGGATGGAGCAGCCACAATTGCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.63

Weight (kDa)

11.12

Isoelectric Point (pI)

64.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	260, 273
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	32
AclI	AACGTT	2 cut(s)	266, 473
AclWI	GGATC	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	118, 191
AluBI	AGCT	2 cut(s)	88, 293
AluI	AGCT	2 cut(s)	88, 293
Alw26I	GTCTC	4 cut(s)	70, 220, 388, 397
AlwI	GGATC	1 cut(s)	452
ApeKI	GCWGC	5 cut(s)	48, 51, 54, 290, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspLEI	GCGC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	355
BbvI	GCAGC	5 cut(s)	60, 63, 66, 302, 583
BccI	CCATC	3 cut(s)	158, 404, 559
BceAI	ACGGC	2 cut(s)	3, 294
BcoDI	GTCTC	4 cut(s)	70, 220, 388, 397
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	5 cut(s)	49, 52, 55, 291, 572
BlsI	GCNGC	5 cut(s)	50, 53, 56, 292, 573
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	103
BseXI	GCAGC	5 cut(s)	60, 63, 66, 302, 583
BsgI	GTGCAG	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	345, 366
BsmAI	GTCTC	4 cut(s)	70, 220, 388, 397
BsmBI	CGTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	41, 444
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	41, 444
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	2 cut(s)	44, 447
BstMAI	GTCTC	4 cut(s)	70, 220, 388, 397
BstMBI	GATC	2 cut(s)	41, 444
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 29, 54, 155, 290, 315, 580
BstNSI	RCATGY	1 cut(s)	149
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	5 cut(s)	60, 63, 66, 302, 583
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	365
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	3 cut(s)	141, 146, 244
CviJI	RGCY	4 cut(s)	88, 293, 369, 574
CviKI_1	RGCY	4 cut(s)	88, 293, 369, 574
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	2 cut(s)	43, 446
DpnII	GATC	2 cut(s)	41, 444
Eco130I	CCWWGG	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	3 cut(s)	144, 149, 247
FatI	CATG	3 cut(s)	140, 145, 243
FauNDI	CATATG	1 cut(s)	542
FblI	GTMKAC	2 cut(s)	260, 273
Fnu4HI	GCNGC	5 cut(s)	49, 52, 55, 291, 572
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	5 cut(s)	49, 52, 55, 291, 572
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	5 cut(s)	49, 52, 55, 291, 572
HaeII	RGCGCY	1 cut(s)	19
HapII	CCGG	2 cut(s)	345, 366
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	144, 149, 247
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	76, 166, 240, 478
HpaII	CCGG	2 cut(s)	345, 366
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	261, 274
Hpy188I	TCNGA	2 cut(s)	92, 165
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	2 cut(s)	261, 274
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	3 cut(s)	87, 197, 555
HpyCH4IV	ACGT	3 cut(s)	213, 266, 473
HpyCH4V	TGCA	8 cut(s)	158, 209, 284, 290, 318, 504, 521, 557
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 29, 54, 155, 290, 315, 580
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	3 cut(s)	213, 266, 473
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	144, 149, 247
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	41, 444
LmnI	GCTCC	1 cut(s)	568
LpnPI	CCDG	3 cut(s)	358, 379, 533
Lsp1109I	GCAGC	5 cut(s)	60, 63, 66, 302, 583
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	3 cut(s)	213, 266, 473
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	43, 446
MboI	GATC	2 cut(s)	41, 444
MboII	GAAGA	4 cut(s)	369, 391, 427, 480
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	1 cut(s)	41
MluCI	AATT	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	2 cut(s)	105, 142
MspI	CCGG	2 cut(s)	345, 366
MunI	CAATTG	1 cut(s)	578
Mva1269I	GAATGC	1 cut(s)	523
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	7 cut(s)	15, 29, 54, 155, 290, 315, 580
NcoI	CCATGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	542
NdeII	GATC	2 cut(s)	41, 444
NlaIII	CATG	3 cut(s)	144, 149, 247
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	523
PfeI	GAWTC	3 cut(s)	76, 166, 478
PkrI	GCNGC	5 cut(s)	50, 53, 56, 292, 573
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp1406I	AACGTT	2 cut(s)	266, 473
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	259
SatI	GCNGC	5 cut(s)	49, 52, 55, 291, 572
Sau3AI	GATC	2 cut(s)	41, 444
SchI	GAGTC	1 cut(s)	249
SetI	ASST	7 cut(s)	90, 116, 208, 216, 269, 295, 476
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	1 cut(s)	578
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	140
TaiI	ACGT	3 cut(s)	216, 269, 476
TaqI	TCGA	4 cut(s)	225, 260, 337, 484
TasI	AATT	1 cut(s)	578
TfiI	GAWTC	3 cut(s)	76, 166, 478
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	5 cut(s)	48, 51, 54, 290, 571
TspDTI	ATGAA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	177
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XmiI	GTMKAC	2 cut(s)	260, 273
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.