Rh6BG056600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000574
Physical Location & Seq
Reverse (-)
9066292 .. 9066930
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG056600.1

Sequence Viewer

Length: 639 bp
ATGGCTGATTTCCGCCATCAATGGCCATCCTTGGTCTTATCGCCTGAACGTGTAAGTGAACGTGATAATATCCTTGTGATCTTCAACATTGTTCTTGTAGACTTTGCAAGACAAACAGCCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCCAGCTGCCGGAATACTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGCAGCTACTCAAAACTTATTCCCAACTCACGTTGGAAAACTTCGCATGGCTATGAAGTTAACAGCTTCGCTCTCAGTGGCTTCACTTGTTTCTCTACTGCTTCCCAAGCCGTGGGACCACGTGCCGTACATGACCTACTTCTTGTATTTTACAGGCCAGTGTCTTGGGTTAGTCCAGAAATATATTTCTGCTTATTACCACCACGTTGCAAGTGGATTTGTGCGTACCTTAAGCGTGCATCAACAGCAGTTGAGAAGAACGCGGCCACCGTTGCCGTTGACAGTCGGTCTGCCCAATATGTCCAACCAGCCAATTGCGAACCATAGATCGATCACGGAAGTCAGAACCCTCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

9.89

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 544
AciI CCGC 2 cut(s) 13, 544
AcoI YGGCCR 2 cut(s) 23, 545
AcvI CACGTG 1 cut(s) 403
AfaI GTAC 2 cut(s) 410, 508
AfiI CCNNNNNNNGG 2 cut(s) 194, 393
AflII CTTAAG 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 85, 218
AhdI GACNNNNNGTC 1 cut(s) 567
AluBI AGCT 4 cut(s) 191, 255, 287, 347
AluI AGCT 4 cut(s) 191, 255, 287, 347
AoxI GGCC 3 cut(s) 23, 436, 545
ApeKI GCWGC 2 cut(s) 191, 284
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 178, 296
BccI CCATC 2 cut(s) 24, 34
BceAI ACGGC 3 cut(s) 376, 391, 541
BfrI CTTAAG 1 cut(s) 511
BisI GCNGC 3 cut(s) 192, 285, 545
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 3 cut(s) 193, 286, 546
Bme18I GGWCC 1 cut(s) 397
BmeRI GACNNNNNGTC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 611
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 30, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 393
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 30, 392
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 194, 393
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 265, 369
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 178, 296
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 3 cut(s) 25, 438, 547
BshVI ATCGAT 1 cut(s) 611
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 194, 393
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 3 cut(s) 25, 438, 547
Bsp143I GATC 4 cut(s) 78, 177, 608, 612
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 2 cut(s) 13, 544
BspANI GGCC 3 cut(s) 25, 438, 547
BspCNI CTCAG 2 cut(s) 264, 368
BspDI ATCGAT 1 cut(s) 611
BspFNI CGCG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 398
BspTI CTTAAG 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 30, 392
BssMI GATC 4 cut(s) 78, 177, 608, 612
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 204, 552, 565
BstAFI CTTAAG 1 cut(s) 511
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 251, 355
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 544
BstKTI GATC 4 cut(s) 81, 180, 611, 615
BstMBI GATC 4 cut(s) 78, 177, 608, 612
BstMWI GCNNNNNNNGC 6 cut(s) 261, 270, 284, 388, 526, 553
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 178, 296
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 2 cut(s) 238, 446
Bsu15I ATCGAT 1 cut(s) 611
BsuRI GGCC 3 cut(s) 25, 438, 547
BsuTUI ATCGAT 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 363, 446
Cac8I GCNNGC 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 397
ClaI ATCGAT 1 cut(s) 611
Csp6I GTAC 2 cut(s) 409, 507
CviAII CATG 4 cut(s) 238, 247, 328, 412
CviQI GTAC 2 cut(s) 409, 507
DdeI CTNAG 2 cut(s) 251, 355
DpnI GATC 4 cut(s) 80, 179, 610, 614
DpnII GATC 4 cut(s) 78, 177, 608, 612
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 2 cut(s) 23, 545
Eam1105I GACNNNNNGTC 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 241, 250, 331, 415
FaiI YATR 9 cut(s) 228, 239, 248, 329, 335, 413, 465, 581, 606
FaqI GGGAC 1 cut(s) 410
FatI CATG 4 cut(s) 237, 246, 327, 411
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 192, 285, 545
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 192, 285, 545
GluI GCNGC 3 cut(s) 192, 285, 545
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 3 cut(s) 25, 438, 547
HapII CCGG 1 cut(s) 195
Hin1II CATG 4 cut(s) 241, 250, 331, 415
HincII GTYRAC 2 cut(s) 342, 561
HindII GTYRAC 2 cut(s) 342, 561
HinfI GANTC 1 cut(s) 183
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 4 cut(s) 59, 100, 342, 561
Hpy188I TCNGA 2 cut(s) 182, 626
Hpy188III TCNNGA 2 cut(s) 175, 457
Hpy8I GTNNAC 4 cut(s) 59, 100, 342, 561
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 204, 552, 565
HpyCH4IV ACGT 5 cut(s) 49, 61, 312, 402, 486
HpyCH4V TGCA 4 cut(s) 107, 284, 491, 520
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 270, 284, 388, 526, 553
HpyF3I CTNAG 2 cut(s) 251, 355
HpySE526I ACGT 5 cut(s) 49, 61, 312, 402, 486
Hsp92II CATG 4 cut(s) 241, 250, 331, 415
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 4 cut(s) 78, 177, 608, 612
LpnPI CCDG 8 cut(s) 57, 188, 201, 208, 420, 452, 470, 602
Lsp1109I GCAGC 2 cut(s) 178, 296
LweI GCATC 1 cut(s) 529
MaeII ACGT 5 cut(s) 49, 61, 312, 402, 486
MalI GATC 4 cut(s) 80, 179, 610, 614
MboI GATC 4 cut(s) 78, 177, 608, 612
MboII GAAGA 3 cut(s) 73, 198, 549
MfeI CAATTG 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 1 cut(s) 594
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 2 cut(s) 295, 609
MnlI CCTC 2 cut(s) 133, 173
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 2 cut(s) 341, 512
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 594
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 6 cut(s) 261, 270, 284, 388, 526, 553
NdeII GATC 4 cut(s) 78, 177, 608, 612
NlaIII CATG 4 cut(s) 241, 250, 331, 415
NlaIV GGNNCC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 3 cut(s) 193, 286, 546
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 403
PspCI CACGTG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 410, 508
RsaNI GTAC 2 cut(s) 409, 507
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 341, 512
SatI GCNGC 3 cut(s) 192, 285, 545
Sau3AI GATC 4 cut(s) 78, 177, 608, 612
Sau96I GGNCC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 529
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
Sse9I AATT 1 cut(s) 594
SsiI CCGC 2 cut(s) 13, 544
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 204, 552, 565
TaiI ACGT 5 cut(s) 52, 64, 315, 405, 489
TaqI TCGA 1 cut(s) 611
TaqII GACCGA 1 cut(s) 557
TasI AATT 1 cut(s) 594
TauI GCSGC 1 cut(s) 547
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 341, 512
Tru9I TTAA 2 cut(s) 341, 512
TscAI CASTG 2 cut(s) 363, 446
TseI GCWGC 2 cut(s) 191, 284
TspDTI ATGAA 3 cut(s) 136, 226, 350
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 2 cut(s) 363, 446
Van91I CCANNNNNTGG 1 cut(s) 393
Vha464I CTTAAG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.