Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Forward (+)

13194020 .. 13194664

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTGAATCCCGCCATCAATGGCCATCCTTGCTCTTACAGCCTGAACGTGTACGTGAACGTGATATTATCTTTGTCATCTTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAGTCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCCAGCTGCCGGAATACTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCAAAACTTCTTCCCGACTCGTCACGCTGCAAAGCTTCGCATGGCTATGAATTTAACAGCTTCGCTCTCAGTGGCTTCACTTGTTTCTCTTTTGCTTCCCAAGCCGTGGGACCAAGTGCCGTACGTGACCTACTCCTTGTATTTTACAGGCCAGTGTCTTGGGTTAGTCAGAAAGATATTTCTGACTTATTACCACCACGTTGCAAATGGATTTGTGCGTCCCTTACGCGCGCATCAACAGCAGTTGAGAAGAACGCGCCCACCGTTGTTGCCGCTGACAGTCAGTCTGCCCAATATCTCCGACCAGCCAATTGCGAACCATGGATCGATCACCGAAGTCAGAACATTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.38

Weight (kDa)

10.27

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	3 cut(s)	519, 521, 547
AciI	CCGC	2 cut(s)	13, 563
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	2 cut(s)	54, 413
AfiI	CCNNNNNNNGG	2 cut(s)	194, 396
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	85, 218
AhdI	GACNNNNNGTC	2 cut(s)	116, 573
AluBI	AGCT	5 cut(s)	191, 255, 287, 325, 350
AluI	AGCT	5 cut(s)	191, 255, 287, 325, 350
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	2 cut(s)	23, 439
ApeKI	GCWGC	2 cut(s)	191, 317
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	3 cut(s)	521, 523, 549
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	157, 613
AvaII	GGWCC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	178, 304
BccI	CCATC	2 cut(s)	24, 34
BceAI	ACGGC	2 cut(s)	379, 394
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	192, 318, 563
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	3 cut(s)	193, 319, 564
Bme18I	GGWCC	1 cut(s)	400
BmeRI	GACNNNNNGTC	2 cut(s)	116, 573
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	401
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	617
BsaAI	YACGTR	2 cut(s)	56, 415
BsaJI	CCNNGG	2 cut(s)	395, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 396
Bse1I	ACTGG	1 cut(s)	442
BseCI	ATCGAT	1 cut(s)	617
BseDI	CCNNGG	2 cut(s)	395, 610
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	194, 396
BseMII	CTCAG	2 cut(s)	265, 372
BseNI	ACTGG	1 cut(s)	442
BsePI	GCGCGC	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	178, 304
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	3 cut(s)	519, 521, 547
BshFI	GGCC	2 cut(s)	25, 441
BshVI	ATCGAT	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	195
BsiWI	CGTACG	1 cut(s)	411
BslFI	GGGAC	3 cut(s)	104, 413, 495
BslI	CCNNNNNNNGG	2 cut(s)	194, 396
BsmFI	GGGAC	3 cut(s)	104, 413, 495
BsnI	GGCC	2 cut(s)	25, 441
Bsp143I	GATC	3 cut(s)	177, 614, 618
Bsp1720I	GCTNAGC	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	2 cut(s)	13, 563
BspANI	GGCC	2 cut(s)	25, 441
BspCNI	CTCAG	2 cut(s)	264, 371
BspDI	ATCGAT	1 cut(s)	617
BspFNI	CGCG	3 cut(s)	519, 521, 547
BspLI	GGNNCC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	395, 610
BssHII	GCGCGC	1 cut(s)	519
BssMI	GATC	3 cut(s)	177, 614, 618
BssT1I	CCWWGG	1 cut(s)	610
Bst4CI	ACNGT	4 cut(s)	118, 204, 555, 571
BstBAI	YACGTR	2 cut(s)	56, 415
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	251, 358
BstDSI	CCRYGG	2 cut(s)	395, 610
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	3 cut(s)	519, 521, 547
BstHHI	GCGC	3 cut(s)	521, 523, 549
BstKTI	GATC	3 cut(s)	180, 617, 621
BstMBI	GATC	3 cut(s)	177, 614, 618
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 40, 261, 270, 284, 391, 529
BstUI	CGCG	3 cut(s)	519, 521, 547
BstV1I	GCAGC	2 cut(s)	178, 304
BstV2I	GAAGAC	1 cut(s)	198
BstXI	CCANNNNNNTGG	2 cut(s)	238, 449
Bsu15I	ATCGAT	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	25, 441
BsuTUI	ATCGAT	1 cut(s)	617
BtgI	CCRYGG	2 cut(s)	395, 610
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	366, 449
Cac8I	GCNNGC	1 cut(s)	521
CfoI	GCGC	3 cut(s)	521, 523, 549
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	617
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	53, 412
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	4 cut(s)	238, 247, 331, 611
CviQI	GTAC	2 cut(s)	53, 412
DdeI	CTNAG	2 cut(s)	251, 358
DpnI	GATC	3 cut(s)	179, 616, 620
DpnII	GATC	3 cut(s)	177, 614, 618
DriI	GACNNNNNGTC	2 cut(s)	116, 573
EaeI	YGGCCR	1 cut(s)	23
Eam1105I	GACNNNNNGTC	2 cut(s)	116, 573
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	4 cut(s)	241, 250, 334, 614
FaiI	YATR	6 cut(s)	228, 239, 248, 332, 338, 612
FaqI	GGGAC	3 cut(s)	104, 413, 495
FatI	CATG	4 cut(s)	237, 246, 330, 610
FauI	CCCGC	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	192, 318, 563
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	192, 318, 563
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	3 cut(s)	520, 522, 548
GluI	GCNGC	3 cut(s)	192, 318, 563
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	25, 441
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	3 cut(s)	521, 523, 549
Hin1II	CATG	4 cut(s)	241, 250, 334, 614
Hin6I	GCGC	3 cut(s)	519, 521, 547
HinP1I	GCGC	3 cut(s)	519, 521, 547
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	3 cut(s)	8, 183, 307
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	157, 613
Hpy166II	GTNNAC	3 cut(s)	53, 59, 100
Hpy188I	TCNGA	5 cut(s)	182, 461, 474, 592, 632
Hpy188III	TCNNGA	2 cut(s)	175, 304
Hpy8I	GTNNAC	3 cut(s)	53, 59, 100
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	4 cut(s)	118, 204, 555, 571
HpyCH4IV	ACGT	5 cut(s)	49, 55, 61, 414, 489
HpyCH4V	TGCA	3 cut(s)	107, 320, 494
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 40, 261, 270, 284, 391, 529
HpyF3I	CTNAG	2 cut(s)	251, 358
HpySE526I	ACGT	5 cut(s)	49, 55, 61, 414, 489
Hsp92II	CATG	4 cut(s)	241, 250, 334, 614
HspAI	GCGC	3 cut(s)	519, 521, 547
Kzo9I	GATC	3 cut(s)	177, 614, 618
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	57, 188, 201, 208, 423, 455, 608
Lsp1109I	GCAGC	2 cut(s)	178, 304
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	5 cut(s)	49, 55, 61, 414, 489
MaeIII	GTNAC	2 cut(s)	311, 415
MalI	GATC	3 cut(s)	179, 616, 620
MboI	GATC	3 cut(s)	177, 614, 618
MboII	GAAGA	4 cut(s)	73, 198, 292, 552
MfeI	CAATTG	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	2 cut(s)	340, 600
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	2 cut(s)	133, 173
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	2 cut(s)	191, 565
MspI	CCGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	600
MvnI	CGCG	3 cut(s)	519, 521, 547
MwoI	GCNNNNNNNGC	7 cut(s)	31, 40, 261, 270, 284, 391, 529
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	3 cut(s)	177, 614, 618
NlaIII	CATG	4 cut(s)	241, 250, 334, 614
NlaIV	GGNNCC	1 cut(s)	401
NmuCI	GTSAC	2 cut(s)	311, 415
PauI	GCGCGC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	8, 183
Pfl23II	CGTACG	1 cut(s)	411
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	3 cut(s)	193, 319, 564
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	2 cut(s)	56, 415
PspFI	CCCAGC	1 cut(s)	187
PspLI	CGTACG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	400
PteI	GCGCGC	1 cut(s)	519
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	54, 413
RsaNI	GTAC	2 cut(s)	53, 412
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	3 cut(s)	192, 318, 563
Sau3AI	GATC	3 cut(s)	177, 614, 618
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	532
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	340, 600
SsiI	CCGC	2 cut(s)	13, 563
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	4 cut(s)	118, 204, 555, 571
TaiI	ACGT	5 cut(s)	52, 58, 64, 417, 492
TaqI	TCGA	1 cut(s)	617
TasI	AATT	2 cut(s)	340, 600
TauI	GCSGC	1 cut(s)	565
TfiI	GAWTC	2 cut(s)	8, 183
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	2 cut(s)	366, 449
TseFI	GTSAC	2 cut(s)	311, 415
TseI	GCWGC	2 cut(s)	191, 317
Tsp45I	GTSAC	2 cut(s)	311, 415
TspDTI	ATGAA	3 cut(s)	136, 226, 353
TspRI	CASTG	2 cut(s)	366, 449
Van91I	CCANNNNNTGG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.