RLG00000036002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000574
Physical Location & Seq
Forward (+)
74763760 .. 74764403
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036002

Sequence Viewer

Length: 576 bp
ATGCCTCTCCCCCATTCAAGAAGACACCCATTAATCTTTAGAGAAGCTAGTCCCCAGCCCTCATTCAACATTCTGGTCATCATCAATCAACAAGGGCCTGCTGCCGCTCCGCCTCCTCATCCCACTTCAACTTCCACTCATGCCATTTTTGTTTTTATCGTCACCGTGTTCGTTTCCTTTGTCCAAATCAGGTTCCCAGAAACACAGTCCTCTTCACCATTTGAAACACATCACACAACCATCATGGTTTTCTTTGCTAGCTTAATTTCGTATTGCTCATCTCTTTGGGCGACGAAAAGATTTCCTATTTACGCCTATGTTTTTCGTGTTACCATGAGATCTGCTGGTCTACTTGCACTAGCTTCCCTGCTTTCACTTCTTCTTCCTGTCTCCTGTCACCGTGTGCCATACATGTTGTTAGTCTTCTATTTCATTGGGGAGCGTTTTCAGTTGCTCCGAATGCCATGTCAATTGACTTACCGGCAAGCCATTCATGGATCTGTGTCAGGCATTCGTCGCGGTCGGACGGGTGCAGTATTGCCGCTGACATTCATGGATTTGCCTCCGATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

10.59

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 349
AccII CGCG 1 cut(s) 519
AciI CCGC 4 cut(s) 105, 110, 519, 542
AclWI GGATC 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 4 cut(s) 18, 67, 129, 224
AluBI AGCT 3 cut(s) 47, 261, 362
AluI AGCT 3 cut(s) 47, 261, 362
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 1 cut(s) 505
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 154, 207, 389
AsuNHI GCTAGC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 28, 415
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 48, 258, 359
BglII AGATCT 1 cut(s) 338
BisI GCNGC 3 cut(s) 102, 105, 542
BlsI GCNGC 3 cut(s) 103, 106, 543
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 194
BmtI GCTAGC 1 cut(s) 261
BpiI GAAGAC 2 cut(s) 28, 415
Bse118I RCCGGY 1 cut(s) 480
BseGI GGATG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 519
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 523
BsiSI CCGG 1 cut(s) 481
BslFI GGGAC 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 2 cut(s) 465, 510
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 338, 497
BspACI CCGC 4 cut(s) 105, 110, 519, 542
BspANI GGCC 1 cut(s) 97
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 194
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 505
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 480
BssAI RCCGGY 1 cut(s) 480
BssMI GATC 2 cut(s) 338, 497
Bst4CI ACNGT 3 cut(s) 166, 207, 401
Bst6I CTCTTC 1 cut(s) 217
BstC8I GCNNGC 3 cut(s) 99, 259, 486
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 519
BstKTI GATC 2 cut(s) 341, 500
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 2 cut(s) 338, 497
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 2 cut(s) 460, 516
BstNSI RCATGY 1 cut(s) 415
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 28, 415
BstX2I RGATCY 2 cut(s) 338, 497
BstYI RGATCY 2 cut(s) 338, 497
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 3 cut(s) 99, 259, 486
Cfr10I RCCGGY 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 7 cut(s) 140, 244, 334, 412, 465, 494, 553
CviJI RGCY 6 cut(s) 47, 58, 97, 261, 362, 488
CviKI_1 RGCY 6 cut(s) 47, 58, 97, 261, 362, 488
DpnI GATC 2 cut(s) 340, 499
DpnII GATC 2 cut(s) 338, 497
DraIII CACNNNGTG 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
EciI GGCGGA 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 95
FaeI CATG 7 cut(s) 143, 247, 337, 415, 468, 497, 556
FaiI YATR 9 cut(s) 141, 245, 318, 335, 409, 413, 466, 495, 554
FaqI GGGAC 1 cut(s) 36
FatI CATG 7 cut(s) 139, 243, 333, 411, 464, 493, 552
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 102, 105, 542
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 102, 105, 542
FspBI CTAG 3 cut(s) 48, 258, 359
GluI GCNGC 3 cut(s) 102, 105, 542
GsaI CCCAGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 481
Hin1II CATG 7 cut(s) 143, 247, 337, 415, 468, 497, 556
HpaII CCGG 1 cut(s) 481
HphI GGTGA 3 cut(s) 154, 207, 389
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 3 cut(s) 458, 525, 567
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 2 cut(s) 295, 519
HpyCH4III ACNGT 3 cut(s) 166, 207, 401
HpyCH4V TGCA 2 cut(s) 356, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 516
Hsp92II CATG 7 cut(s) 143, 247, 337, 415, 468, 497, 556
Kzo9I GATC 2 cut(s) 338, 497
LmnI GCTCC 3 cut(s) 112, 439, 459
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 3 cut(s) 48, 258, 359
MaeIII GTNAC 3 cut(s) 160, 328, 395
MalI GATC 2 cut(s) 340, 499
MbiI CCGCTC 1 cut(s) 107
MboI GATC 2 cut(s) 338, 497
MboII GAAGA 5 cut(s) 33, 204, 371, 374, 415
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 2 cut(s) 338, 497
MluCI AATT 3 cut(s) 264, 470, 571
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 6 cut(s) 15, 70, 123, 126, 220, 573
MseI TTAA 2 cut(s) 32, 263
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 1 cut(s) 481
MunI CAATTG 1 cut(s) 470
Mva1269I GAATGC 2 cut(s) 465, 510
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 460, 516
NdeII GATC 2 cut(s) 338, 497
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 7 cut(s) 143, 247, 337, 415, 468, 497, 556
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 160, 395
NspI RCATGY 1 cut(s) 415
PciI ACATGT 1 cut(s) 411
PctI GAATGC 2 cut(s) 465, 510
PkrI GCNGC 3 cut(s) 103, 106, 543
PscI ACATGT 1 cut(s) 411
PshBI ATTAAT 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 2 cut(s) 338, 497
SaqAI TTAA 2 cut(s) 32, 263
SatI GCNGC 3 cut(s) 102, 105, 542
Sau3AI GATC 2 cut(s) 338, 497
Sau96I GGNCC 1 cut(s) 95
SetI ASST 4 cut(s) 49, 194, 263, 364
Sse9I AATT 3 cut(s) 264, 470, 571
SsiI CCGC 4 cut(s) 105, 110, 519, 542
SspMI CTAG 3 cut(s) 48, 258, 359
TaaI ACNGT 3 cut(s) 166, 207, 401
TasI AATT 3 cut(s) 264, 470, 571
TauI GCSGC 2 cut(s) 107, 544
Tru1I TTAA 2 cut(s) 32, 263
Tru9I TTAA 2 cut(s) 32, 263
TseFI GTSAC 2 cut(s) 160, 395
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 160, 395
TspDTI ATGAA 3 cut(s) 421, 482, 541
VspI ATTAAT 1 cut(s) 32
XceI RCATGY 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 349
XspI CTAG 3 cut(s) 48, 258, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.