Prupe.2G180000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000574
Physical Location & Seq
Forward (+)
22353129 .. 22353716
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G180000.1

Sequence Viewer

Length: 588 bp
ATGGCTGCAGAAATCCGCTATCAATGGCGATCCATAGTTTTACATGAGCATGATTCCTTTATTTATGTCACATTCAACATTCTACTAATCAATCTTGCCCAACAAGTGCCTGCTCCTGCTCCTGCTTCCACTTCCACTTCCGCTTCCACTCATGCCATTCTTGCTTTTATAGTTCCCATTCTCCTCACCTTTGTTCAGATTAAATTCCAAGGAGCGTCTTCACCTTTTGAAACGCACCATACCACCACCATGGTTGCCATAGCCAGCTTACTTGCATTCAGCTTGGCTGTTGGGGCCAAGCTAAGGTTCCCTACTCACTCTCCTACCTATTCTAGCTTCGCCGTAGGGTTCTCTGGTTTACTCTCAGTTGCTTCGCTGCTCTCCCTTCTGCTTCCCGATTCTTGGCACCATGTCCCCTACATGGTGTTCTTCATGTATCTGATGAGCGAGTGCTTTGCAGGGGTTAGAATGATAGGTCGATTGGCTTACCAGCAAGCTGTTCATGGATTTCTTTGTGTGTTATTCTACTTATTCGAGCATCACCGTTGGGTGACAAGGGCTCGCCAATTGCCCCTCACATTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.85

Weight (kDa)

9.06

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AciI CCGC 2 cut(s) 16, 141
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 303, 402, 421
AgsI TTSAA 2 cut(s) 76, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 5 cut(s) 267, 282, 301, 336, 497
AluI AGCT 5 cut(s) 267, 282, 301, 336, 497
AlwI GGATC 1 cut(s) 24
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 5, 376
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 4 cut(s) 178, 213, 533, 562
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 363
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 6, 377
BlsI GCNGC 2 cut(s) 7, 378
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 3 cut(s) 295, 308, 407
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 208, 249
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 402, 421
BseDI CCNNGG 2 cut(s) 208, 249
BseLI CCNNNNNNNGG 3 cut(s) 303, 402, 421
BseMII CTCAG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 363
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 405
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 303, 402, 421
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 2 cut(s) 16, 141
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 377
BspLI GGNNCC 3 cut(s) 295, 308, 407
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 208, 249
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 208, 249
Bst4CI ACNGT 1 cut(s) 545
BstC8I GCNNGC 4 cut(s) 111, 265, 495, 562
BstDEI CTNAG 2 cut(s) 302, 364
BstDSI CCRYGG 1 cut(s) 249
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 161, 293
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 249
Cac8I GCNNGC 4 cut(s) 111, 265, 495, 562
Cfr13I GGNCC 1 cut(s) 294
CseI GACGC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 8 cut(s) 44, 50, 152, 250, 410, 421, 433, 503
DdeI CTNAG 2 cut(s) 302, 364
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 208, 249
Eco24I GRGCYC 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 208, 249
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 208, 249
FaeI CATG 8 cut(s) 47, 53, 155, 253, 413, 424, 436, 506
FaqI GGGAC 1 cut(s) 398
FatI CATG 8 cut(s) 43, 49, 151, 249, 409, 420, 432, 502
Fnu4HI GCNGC 2 cut(s) 6, 377
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 2 cut(s) 6, 377
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 6, 377
HaeIII GGCC 1 cut(s) 296
HgaI GACGC 1 cut(s) 204
Hin1II CATG 8 cut(s) 47, 53, 155, 253, 413, 424, 436, 506
HinfI GANTC 2 cut(s) 53, 398
HphI GGTGA 4 cut(s) 178, 213, 533, 562
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 2 cut(s) 198, 441
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 3 cut(s) 8, 275, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 293
HpyF3I CTNAG 2 cut(s) 302, 364
Hsp92II CATG 8 cut(s) 47, 53, 155, 253, 413, 424, 436, 506
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 3 cut(s) 118, 124, 212
LpnPI CCDG 7 cut(s) 123, 129, 135, 277, 339, 444, 503
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 67, 550
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 210, 421
MfeI CAATTG 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 2 cut(s) 203, 566
MnlI CCTC 2 cut(s) 194, 584
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 3 cut(s) 48, 248, 583
MunI CAATTG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 161, 293
NcoI CCATGG 1 cut(s) 249
NdeII GATC 1 cut(s) 29
NlaIII CATG 8 cut(s) 47, 53, 155, 253, 413, 424, 436, 506
NlaIV GGNNCC 3 cut(s) 295, 308, 407
NmuCI GTSAC 2 cut(s) 67, 550
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 53, 398
PkrI GCNGC 2 cut(s) 7, 378
PspN4I GGNNCC 3 cut(s) 295, 308, 407
PspPI GGNCC 1 cut(s) 294
PstI CTGCAG 1 cut(s) 10
RseI CAYNNNNRTG 3 cut(s) 48, 248, 583
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 6, 377
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 294
SduI GDGCHC 1 cut(s) 562
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 3 cut(s) 48, 248, 583
Sse9I AATT 2 cut(s) 203, 566
SsiI CCGC 2 cut(s) 16, 141
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 2 cut(s) 208, 249
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 478, 534
TasI AATT 2 cut(s) 203, 566
TfiI GAWTC 2 cut(s) 53, 398
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 2 cut(s) 67, 550
TseI GCWGC 2 cut(s) 5, 376
Tsp45I GTSAC 2 cut(s) 67, 550
TspDTI ATGAA 2 cut(s) 421, 491
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.