Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Forward (+)

22369551 .. 22370036

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGGATCTTCACTCTCAAAGGCGCCAAGCCATAATCTTACATGTACACAATTCCTTTGTTTTCACATCCAATATTCTGCTTATCAATCTTGCAAGCCAATATTTGCCTGCTGCTTCCACCCATTCCATTTTTGCGTTTATAGTGTCAGTACTTCTTGCCCTAATTCAAATCAAGTTCCCGGGAATATCAATGTTGCCTTCTCCATTTGAAACCCATCATACCACCACCATGGTTGCCATTGCAAGCTTACTTGCCTACAGCTCCGCTGTTGCAGCTAGGCTAAGATTCCCTACTTACTCTCCCACCAACTTTCGCTTGGCCATCATGTTTTCTGCTTTACTTTCAGTTGCATCTCTGCTATCGCTTCTCCTTCCTAACTCCTGGCACCACATCCCATATGTGGTCTTCATCTTCTACTATTTGGTGGCCGAGCAGGGTTTTGGCTTGCTCCGAATGCTATGTCAGCGTCGCGTGGCACCAACA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.09

Weight (kDa)

10.12

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	24, 387, 478
AccII	CGCG	1 cut(s)	474
AciI	CCGC	2 cut(s)	5, 267
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	2 cut(s)	321, 429
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	2 cut(s)	48, 153
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	170, 212
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	249, 264, 278
AluI	AGCT	3 cut(s)	249, 264, 278
AlwI	GGATC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	321, 429
ApeKI	GCWGC	2 cut(s)	113, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AspLEI	GCGC	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	182, 183
AvaI	CYCGRG	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	3 cut(s)	24, 387, 478
BbsI	GAAGAC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	100, 287
BccI	CCATC	2 cut(s)	225, 332
BciT130I	CCWGG	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	182, 183
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	28
BisI	GCNGC	2 cut(s)	114, 276
BlsI	GCNGC	2 cut(s)	115, 277
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	3 cut(s)	182, 183, 385
BmeT110I	CYCGRG	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	26, 389, 480
BmrFI	CCNGG	3 cut(s)	182, 183, 385
BmsI	GCATC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	182, 183
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	181, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	181, 231
BseGI	GGATG	2 cut(s)	68, 393
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	100, 287
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	323, 431
BshNI	GGYRCC	3 cut(s)	24, 387, 478
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	323, 431
BsoBI	CYCGRG	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	2 cut(s)	5, 267
BspANI	GGCC	2 cut(s)	323, 431
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	26, 389, 480
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	3 cut(s)	24, 387, 478
BsrDI	GCAATG	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	181, 231
BssMI	GATC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	97, 111, 247, 449
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	68, 393
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 457, 466
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	180, 181, 383
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	100, 287
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	323, 431
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	68, 393
Cac8I	GCNNGC	4 cut(s)	97, 111, 247, 449
CfoI	GCGC	1 cut(s)	27
Cfr9I	CCCGGG	1 cut(s)	181
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	47, 152
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	3 cut(s)	44, 232, 328
CviJI	RGCY	9 cut(s)	32, 99, 249, 264, 278, 283, 323, 431, 447
CviKI_1	RGCY	9 cut(s)	32, 99, 249, 264, 278, 283, 323, 431, 447
CviQI	GTAC	2 cut(s)	47, 152
DdeI	CTNAG	1 cut(s)	284
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	2 cut(s)	321, 429
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	47, 235, 331
FaiI	YATR	9 cut(s)	35, 45, 143, 222, 233, 329, 400, 402, 463
FatI	CATG	3 cut(s)	43, 231, 327
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	114, 276
FokI	GGATG	2 cut(s)	55, 380
Fsp4HI	GCNGC	2 cut(s)	114, 276
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	114, 276
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	2 cut(s)	323, 431
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	47, 235, 331
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	474
HpyAV	CCTTC	2 cut(s)	210, 383
HpyCH4V	TGCA	4 cut(s)	95, 245, 275, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 457, 466
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	47, 235, 331
HspAI	GCGC	1 cut(s)	25
KasI	GGCGCC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	269, 456
LpnPI	CCDG	5 cut(s)	123, 195, 370, 397, 422
Lsp1109I	GCAGC	2 cut(s)	100, 287
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	279
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	400, 406
MflI	RGATCY	1 cut(s)	7
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	2 cut(s)	52, 165
MluNI	TGGCCA	1 cut(s)	323
Mly113I	GGCGCC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	182, 183, 385
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	385
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	275, 457, 466
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	182, 183
NcoI	CCATGG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	47, 235, 331
NlaIV	GGNNCC	3 cut(s)	26, 389, 480
NmeAIII	GCCGAG	1 cut(s)	457
NspI	RCATGY	1 cut(s)	47
PciI	ACATGT	1 cut(s)	43
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	115, 277
PluTI	GGCGCC	1 cut(s)	28
PscI	ACATGT	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	3 cut(s)	26, 389, 480
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	2 cut(s)	48, 153
RsaNI	GTAC	2 cut(s)	47, 152
RseI	CAYNNNNRTG	1 cut(s)	230
SatI	GCNGC	2 cut(s)	114, 276
Sau3AI	GATC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	153
ScrFI	CCNGG	3 cut(s)	182, 183, 385
SetI	ASST	3 cut(s)	251, 266, 280
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	259
SfoI	GGCGCC	1 cut(s)	26
SmaI	CCCGGG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	52, 165
SsiI	CCGC	2 cut(s)	5, 267
SspDI	GGCGCC	1 cut(s)	24
SspI	AATATT	2 cut(s)	76, 104
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	180, 181, 383
StyI	CCWWGG	1 cut(s)	231
TasI	AATT	2 cut(s)	52, 165
TatI	WGTACW	2 cut(s)	46, 151
TfiI	GAWTC	1 cut(s)	288
TseI	GCWGC	2 cut(s)	113, 275
TspDTI	ATGAA	1 cut(s)	400
TspMI	CCCGGG	1 cut(s)	181
XceI	RCATGY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	181
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.