Rroxscaffold_1G00012110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000574
Physical Location & Seq
Reverse (-)
14985198 .. 15003559
18362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012110.1

Sequence Viewer

Length: 813 bp
ATGAAAGAAGTTTTCTCAAGAAGTACATGGATCATAAATTCAACTTTGGGTCTACTAAATGTTCAATACGAAGGAAAAAAGAAGAAAGAGGCCGAAATCGCCCAAAATCGCTCAAATCCGAAATTCGTCTTCCTCGGTTTGAATCGAGATGTGAAACTTGGTGAGTTTGTAGAGCATGGCAAGGCGACCAAAGCCCAGTTGGATGGGGATGGAGAATCCTCTCGAGGGAGGAGAGGGAATGAGAGTGGAAGAATAAATGGGAATGAAGATGGTAATCATGGTATTGTGATTACCCCCTCATTCAATACTCTGATCATCATCAATCAACAAGGGCTTGCTGCTGCTGCTCCTGCTCCACCTCCTCCATCTCCTTCCACTTCAACTCCCACACATTCCATTTTTGCCTTCATTGTCACCGTGTTTGTCTCCTTTGTCCAAATCAAATTCCCACAAACTCAGACCTCTTCACCATTTGAAACACATCACACAACCATCATGGTTTTCTTTGCTAGCTTAATTTTGTATTGCTTATCTCTTTGGGCCACGAAAAGATTTCCTAGTCACGCCTATGTGTTTCACGTTACCATGAGATCTGTTGGTCTACTTGCACTAGCTTCATTGCTTTCACTTCTTCTTCCTGGCTCCTGTCATCGTGTGCCATACATGTTGTTAGTCTTCTATTTTACTGGGGAGTGTTTTCAGTTGCTCCGAATGCCATGTCAATTGACTCATAGATCTGGGTCAGGCATTCGTCACGGTCGGAGGCGTGCAGTGTTGCCACTGACATTCATGGATTTGCCTCCGATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.94

Weight (kDa)

9.83

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 52, 601
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 3 cut(s) 37, 122, 443
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 6 cut(s) 42, 65, 142, 304, 381, 476
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 2 cut(s) 513, 614
AluI AGCT 2 cut(s) 513, 614
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 2 cut(s) 90, 540
ApeKI GCWGC 3 cut(s) 338, 341, 344
ApoI RAATTY 3 cut(s) 37, 122, 443
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 3 cut(s) 173, 406, 459
AsuNHI GCTAGC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 222
BbsI GAAGAC 2 cut(s) 121, 667
BbvI GCAGC 3 cut(s) 325, 328, 331
BccI CCATC 5 cut(s) 197, 203, 263, 373, 500
BciT130I CCWGG 1 cut(s) 639
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 3 cut(s) 510, 558, 611
BglII AGATCT 2 cut(s) 590, 734
BisI GCNGC 3 cut(s) 339, 342, 345
BlsI GCNGC 3 cut(s) 340, 343, 346
Bme1390I CCNGG 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 2 cut(s) 190, 696
BmtI GCTAGC 1 cut(s) 513
BmuI ACTGGG 2 cut(s) 190, 696
BpiI GAAGAC 2 cut(s) 121, 667
BsaBI GATNNNNATC 2 cut(s) 273, 317
BsaJI CCNNGG 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 196, 691
Bse3DI GCAATG 1 cut(s) 617
Bse8I GATNNNNATC 2 cut(s) 273, 317
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 208, 214
BseJI GATNNNNATC 2 cut(s) 273, 317
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 2 cut(s) 196, 691
BseRI GAGGAG 2 cut(s) 244, 351
BseXI GCAGC 3 cut(s) 325, 328, 331
BsgI GTGCAG 1 cut(s) 789
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 2 cut(s) 92, 542
BsiEI CGRYCG 1 cut(s) 760
BsiHKCI CYCGRG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 430
BsmI GAATGC 2 cut(s) 717, 747
BsnI GGCC 2 cut(s) 92, 542
BsoBI CYCGRG 1 cut(s) 222
Bsp143I GATC 4 cut(s) 30, 312, 590, 734
BspANI GGCC 2 cut(s) 92, 542
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 643
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 2 cut(s) 196, 691
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 4 cut(s) 30, 312, 590, 734
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 2 cut(s) 418, 758
Bst6I CTCTTC 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 336, 511, 768
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 208, 214
BstKTI GATC 4 cut(s) 33, 315, 593, 737
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 4 cut(s) 30, 312, 590, 734
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 5 cut(s) 98, 191, 344, 350, 712
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 637
BstV1I GCAGC 3 cut(s) 325, 328, 331
BstV2I GAAGAC 2 cut(s) 121, 667
BstX2I RGATCY 2 cut(s) 590, 734
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 2 cut(s) 590, 734
BsuRI GGCC 2 cut(s) 92, 542
BtsCI GGATG 2 cut(s) 208, 214
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 2 cut(s) 777, 779
Cac8I GCNNGC 3 cut(s) 336, 511, 768
Cfr13I GGNCC 1 cut(s) 540
Csp6I GTAC 1 cut(s) 24
CviAII CATG 8 cut(s) 27, 176, 278, 496, 586, 664, 717, 790
CviJI RGCY 7 cut(s) 92, 194, 334, 513, 542, 614, 642
CviKI_1 RGCY 7 cut(s) 92, 194, 334, 513, 542, 614, 642
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 456
DpnI GATC 4 cut(s) 32, 314, 592, 736
DpnII GATC 4 cut(s) 30, 312, 590, 734
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 637
FaeI CATG 8 cut(s) 30, 179, 281, 499, 589, 667, 720, 793
FatI CATG 8 cut(s) 26, 175, 277, 495, 585, 663, 716, 789
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 2 cut(s) 52, 601
Fnu4HI GCNGC 3 cut(s) 339, 342, 345
FokI GGATG 2 cut(s) 215, 221
Fsp4HI GCNGC 3 cut(s) 339, 342, 345
FspBI CTAG 3 cut(s) 510, 558, 611
GluI GCNGC 3 cut(s) 339, 342, 345
HaeIII GGCC 2 cut(s) 92, 542
Hin1II CATG 8 cut(s) 30, 179, 281, 499, 589, 667, 720, 793
HinfI GANTC 3 cut(s) 142, 215, 727
HphI GGTGA 3 cut(s) 173, 406, 459
Hpy166II GTNNAC 2 cut(s) 53, 602
Hpy188I TCNGA 6 cut(s) 120, 312, 459, 710, 762, 804
Hpy188III TCNNGA 3 cut(s) 18, 146, 222
Hpy8I GTNNAC 2 cut(s) 53, 602
HpyAV CCTTC 3 cut(s) 65, 381, 415
HpyCH4III ACNGT 2 cut(s) 418, 758
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 2 cut(s) 608, 770
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 191, 344, 350, 712
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 8 cut(s) 30, 179, 281, 499, 589, 667, 720, 793
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 4 cut(s) 30, 312, 590, 734
LmnI GCTCC 4 cut(s) 352, 358, 647, 711
LpnPI CCDG 8 cut(s) 209, 363, 624, 651, 658, 672, 723, 729
Lsp1109I GCAGC 3 cut(s) 325, 328, 331
MaeI CTAG 3 cut(s) 510, 558, 611
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 4 cut(s) 412, 560, 580, 752
MalI GATC 4 cut(s) 32, 314, 592, 736
MboI GATC 4 cut(s) 30, 312, 590, 734
MboII GAAGA 8 cut(s) 94, 121, 261, 278, 456, 623, 626, 667
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 2 cut(s) 590, 734
MluCI AATT 6 cut(s) 37, 122, 443, 516, 722, 808
MlyI GAGTC 1 cut(s) 721
MmeI TCCRAC 2 cut(s) 180, 740
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 567
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 722
Mva1269I GAATGC 2 cut(s) 717, 747
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 5 cut(s) 98, 191, 344, 350, 712
NdeII GATC 4 cut(s) 30, 312, 590, 734
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 8 cut(s) 30, 179, 281, 499, 589, 667, 720, 793
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 3 cut(s) 412, 560, 752
NspI RCATGY 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 222
PciI ACATGT 1 cut(s) 663
PctI GAATGC 2 cut(s) 717, 747
PfeI GAWTC 2 cut(s) 142, 215
PkrI GCNGC 3 cut(s) 340, 343, 346
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
PscI ACATGT 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 1 cut(s) 540
PsuI RGATCY 2 cut(s) 590, 734
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 3 cut(s) 339, 342, 345
Sau3AI GATC 4 cut(s) 30, 312, 590, 734
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 1 cut(s) 639
SetI ASST 5 cut(s) 361, 464, 515, 582, 616
Sfr274I CTCGAG 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 16, 222
SmoI CTYRAG 2 cut(s) 16, 222
Sse9I AATT 6 cut(s) 37, 122, 443, 516, 722, 808
SspMI CTAG 3 cut(s) 510, 558, 611
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 2 cut(s) 418, 758
TaiI ACGT 1 cut(s) 582
TaqI TCGA 2 cut(s) 145, 223
TasI AATT 6 cut(s) 37, 122, 443, 516, 722, 808
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 2 cut(s) 142, 215
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 2 cut(s) 777, 786
TseFI GTSAC 3 cut(s) 412, 560, 752
TseI GCWGC 3 cut(s) 338, 341, 344
Tsp45I GTSAC 3 cut(s) 412, 560, 752
TspDTI ATGAA 5 cut(s) 17, 279, 397, 606, 778
TspRI CASTG 2 cut(s) 777, 786
XapI RAATTY 3 cut(s) 37, 122, 443
XceI RCATGY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 222
XmiI GTMKAC 2 cut(s) 52, 601
XspI CTAG 3 cut(s) 510, 558, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.