Rh2DG150400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000574
Physical Location & Seq
Forward (+)
12577656 .. 12578186
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG150400.1

Sequence Viewer

Length: 531 bp
ATGGCCCCTTCCACCTTCGCCATTTTCACTTTCTTGGTGCCAACACTACTTACCTTCATCCAGATCAAATTCCCGGCTGTTGGAACCCCACCTCTTCCATTTGAAACCCACCACACCAAGTTCATGGCTGCCATTCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCCACCCAAAACTTCTTCCCAAATCATCACGCTGCAAAAAATTTTAAGGCCATCAAGTGTACGGCTTCGCTCTCCGTGGCTTCGCTTGTGTCTCTTTTGCTTCCCAAGCCTTGGGACCAAGTGCCGTACGTGACCTACTTCTTGTATGCATGCCACTGTCTCGGCCTACTCAGAAATATTAATCTGGCTTATTACTACGACATTGCTTGTGGATTCATGCTTAGCTCACGCGCCCGTCGACAGCAGTTGAGAGTCTTGAGACAAACGAGCCGCCCACTGTTGCCGATGACAGTCGCAGATATCTCCAACCACCCGATTGCCAACCATGGATCAAGCACTGAAGTCAGAACAGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.63

Weight (kDa)

9.57

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 282
AccI GTMKAC 1 cut(s) 409
AccII CGCG 1 cut(s) 402
AciI CCGC 1 cut(s) 442
AclWI GGATC 1 cut(s) 508
AcsI RAATTY 2 cut(s) 68, 211
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 2 cut(s) 232, 299
AfiI CCNNNNNNNGG 2 cut(s) 80, 282
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 2 cut(s) 141, 396
AluI AGCT 2 cut(s) 141, 396
Alw26I GTCTC 3 cut(s) 267, 335, 424
AlwI GGATC 1 cut(s) 508
AoxI GGCC 3 cut(s) 3, 219, 334
ApeKI GCWGC 2 cut(s) 128, 203
ApoI RAATTY 2 cut(s) 68, 211
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 4, 286
AsuC2I CCSGG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 115, 190
BccI CCATC 1 cut(s) 230
BceAI ACGGC 2 cut(s) 249, 280
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 267, 335, 424
BisI GCNGC 3 cut(s) 129, 204, 442
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 3 cut(s) 130, 205, 443
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 4, 286
BmiI GGNNCC 5 cut(s) 6, 39, 85, 172, 287
BmrFI CCNGG 1 cut(s) 74
Bpu1102I GCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 246, 281, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 282
Bse3DI GCAATG 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 246, 281, 496
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 80, 282
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 151, 355
BseXI GCAGC 2 cut(s) 115, 190
Bsh1236I CGCG 1 cut(s) 402
BshFI GGCC 3 cut(s) 5, 221, 336
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 74
BsiWI CGTACG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 80, 282
BsmAI GTCTC 3 cut(s) 267, 335, 424
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 3 cut(s) 5, 221, 336
Bsp143I GATC 2 cut(s) 63, 500
Bsp1720I GCTNAGC 1 cut(s) 392
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 1 cut(s) 442
BspANI GGCC 3 cut(s) 5, 221, 336
BspCNI CTCAG 2 cut(s) 150, 354
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 5 cut(s) 6, 39, 85, 172, 287
BspPI GGATC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 246, 281, 496
BssMI GATC 2 cut(s) 63, 500
BssT1I CCWWGG 2 cut(s) 281, 496
Bst4CI ACNGT 4 cut(s) 329, 450, 463, 523
Bst6I CTCTTC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 137, 341, 392
BstDSI CCRYGG 2 cut(s) 246, 496
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 2 cut(s) 66, 503
BstMAI GTCTC 3 cut(s) 267, 335, 424
BstMBI GATC 2 cut(s) 63, 500
BstMWI GCNNNNNNNGC 4 cut(s) 147, 156, 170, 277
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 115, 190
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 3 cut(s) 5, 221, 336
BtgI CCRYGG 2 cut(s) 246, 496
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 325, 446, 507
Cac8I GCNNGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 4, 286
Csp6I GTAC 2 cut(s) 231, 298
CviAII CATG 4 cut(s) 124, 321, 388, 497
CviQI GTAC 2 cut(s) 231, 298
DdeI CTNAG 3 cut(s) 137, 341, 392
DpnI GATC 2 cut(s) 65, 502
DpnII GATC 2 cut(s) 63, 500
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 281, 496
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 531
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 281, 496
EcoT22I ATGCAT 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 281, 496
FaeI CATG 4 cut(s) 127, 324, 391, 500
FaiI YATR 5 cut(s) 125, 318, 322, 389, 498
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 123, 320, 387, 496
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 129, 204, 442
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 129, 204, 442
GlaI GCGC 1 cut(s) 403
GluI GCNGC 3 cut(s) 129, 204, 442
HaeIII GGCC 3 cut(s) 5, 221, 336
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 127, 324, 391, 500
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HinfI GANTC 2 cut(s) 384, 423
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 231, 410, 526
Hpy188I TCNGA 2 cut(s) 344, 518
Hpy188III TCNNGA 2 cut(s) 61, 427
Hpy8I GTNNAC 3 cut(s) 231, 410, 526
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 3 cut(s) 18, 25, 64
HpyCH4III ACNGT 4 cut(s) 329, 450, 463, 523
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 206, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 156, 170, 277
HpyF3I CTNAG 3 cut(s) 137, 341, 392
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 127, 324, 391, 500
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 63, 500
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 74, 87, 341
Lsp1109I GCAGC 2 cut(s) 115, 190
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 65, 502
MboI GATC 2 cut(s) 63, 500
MboII GAAGA 2 cut(s) 86, 178
MluCI AATT 2 cut(s) 68, 211
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 2 cut(s) 61, 501
MnlI CCTC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 2 cut(s) 216, 351
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 147, 156, 170, 277
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 496
NdeII GATC 2 cut(s) 63, 500
NlaIII CATG 4 cut(s) 127, 324, 391, 500
NlaIV GGNNCC 5 cut(s) 6, 39, 85, 172, 287
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 324
PaeI GCATGC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 1 cut(s) 384
Pfl23II CGTACG 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 3 cut(s) 130, 205, 443
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Ppu21I YACGTR 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 351
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 5 cut(s) 6, 39, 85, 172, 287
PspPI GGNCC 2 cut(s) 4, 286
RsaI GTAC 2 cut(s) 232, 299
RsaNI GTAC 2 cut(s) 231, 298
SalI GTCGAC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 216, 351
SatI GCNGC 3 cut(s) 129, 204, 442
Sau3AI GATC 2 cut(s) 63, 500
Sau96I GGNCC 2 cut(s) 4, 286
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 74
SetI ASST 7 cut(s) 17, 56, 94, 143, 303, 308, 398
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
SphI GCATGC 1 cut(s) 324
Sse9I AATT 2 cut(s) 68, 211
SsiI CCGC 1 cut(s) 442
SspI AATATT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 281, 496
TaaI ACNGT 4 cut(s) 329, 450, 463, 523
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 409
TasI AATT 2 cut(s) 68, 211
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 2 cut(s) 216, 351
Tru9I TTAA 2 cut(s) 216, 351
TscAI CASTG 3 cut(s) 332, 453, 514
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 128, 203
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 46, 112, 376
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 3 cut(s) 332, 453, 514
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 286
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 2 cut(s) 68, 211
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 409
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.