Rh6CG056500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000574
Physical Location & Seq
Reverse (-)
5734835 .. 5735476
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG056500.1

Sequence Viewer

Length: 642 bp
ATGGCTGATTTCCGCCATAGATTGCCATCCTTGCTCTTACCGCCTGAACGCGTACGTGAACGTGATAATATCTTGGTCATCTTCAACATTGTTTTAGTAGACTTTGCAAGACAAACAGCCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATTAGATTCCCAGCTGCCGGAATACTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCAAAATTTATTCCCAACGACTCACGCTGGAAAACTTCGCATGGCTATGAAGTTAACAGCTTCGCTCTCAGTGGCTTCACTTGTTTCTCTTCTGCTTCCCAAGCCGTGGGACCACGTGCCGTACGTGACCTACTTCTTGTATTTTACAGGCCAGTGTGTTGGGTTAGTCAGAAATATATTTCTGGCTTATTACCACCACGTTGCAAGTGGATTTGTGCGTACCTTACGCGCGCATCAACAGCAGTTGAGAAGAACGCGCCCACCGTTGCCGCTGACAGTCAGTCTGCCCAATATGTCCAACCAGCCAATTGCGAACCATGGATCGATCACAGAAGTCAGAACCCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.05

Weight (kDa)

10.46

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 396
AccI GTMKAC 1 cut(s) 99
AccII CGCG 4 cut(s) 51, 519, 521, 547
AciI CCGC 3 cut(s) 13, 41, 560
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 1 cut(s) 295
AcvI CACGTG 1 cut(s) 406
AfaI GTAC 3 cut(s) 54, 413, 511
AfiI CCNNNNNNNGG 2 cut(s) 194, 396
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 85, 218
AhdI GACNNNNNGTC 1 cut(s) 570
AluBI AGCT 4 cut(s) 191, 255, 287, 350
AluI AGCT 4 cut(s) 191, 255, 287, 350
AlwI GGATC 1 cut(s) 619
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 295
AspLEI GCGC 3 cut(s) 521, 523, 549
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 400
BbrPI CACGTG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 34
BceAI ACGGC 2 cut(s) 379, 394
BisI GCNGC 2 cut(s) 192, 560
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 2 cut(s) 193, 561
Bme18I GGWCC 1 cut(s) 400
BmeRI GACNNNNNGTC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 614
BsaAI YACGTR 3 cut(s) 56, 406, 415
BsaBI GATNNNNATC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 395, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 396
Bse1I ACTGG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 395, 607
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 194, 396
BseMII CTCAG 2 cut(s) 265, 372
BseNI ACTGG 1 cut(s) 442
BsePI GCGCGC 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 4 cut(s) 51, 519, 521, 547
BshFI GGCC 1 cut(s) 441
BshVI ATCGAT 1 cut(s) 614
BsiSI CCGG 1 cut(s) 195
BsiWI CGTACG 2 cut(s) 52, 411
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 194, 396
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 611, 615
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 3 cut(s) 13, 41, 560
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 264, 371
BspDI ATCGAT 1 cut(s) 614
BspFNI CGCG 4 cut(s) 51, 519, 521, 547
BspLI GGNNCC 1 cut(s) 401
BspPI GGATC 1 cut(s) 619
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 395, 607
BssHII GCGCGC 1 cut(s) 519
BssMI GATC 2 cut(s) 611, 615
BssT1I CCWWGG 1 cut(s) 607
Bst4CI ACNGT 3 cut(s) 204, 555, 568
Bst6I CTCTTC 1 cut(s) 384
BstBAI YACGTR 3 cut(s) 56, 406, 415
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 251, 358
BstDSI CCRYGG 2 cut(s) 395, 607
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 4 cut(s) 51, 519, 521, 547
BstHHI GCGC 3 cut(s) 521, 523, 549
BstKTI GATC 2 cut(s) 614, 618
BstMBI GATC 2 cut(s) 611, 615
BstMWI GCNNNNNNNGC 7 cut(s) 31, 40, 261, 270, 284, 391, 529
BstUI CGCG 4 cut(s) 51, 519, 521, 547
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 2 cut(s) 238, 449
Bsu15I ATCGAT 1 cut(s) 614
BsuRI GGCC 1 cut(s) 441
BsuTUI ATCGAT 1 cut(s) 614
BtgI CCRYGG 2 cut(s) 395, 607
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 366, 449
Cac8I GCNNGC 1 cut(s) 521
CfoI GCGC 3 cut(s) 521, 523, 549
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 614
Csp6I GTAC 3 cut(s) 53, 412, 510
CviAII CATG 4 cut(s) 238, 247, 331, 608
CviQI GTAC 3 cut(s) 53, 412, 510
DdeI CTNAG 2 cut(s) 251, 358
DpnI GATC 2 cut(s) 613, 617
DpnII GATC 2 cut(s) 611, 615
DriI GACNNNNNGTC 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 400
Eco72I CACGTG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 4 cut(s) 241, 250, 334, 611
FaiI YATR 9 cut(s) 18, 228, 239, 248, 332, 338, 467, 584, 609
FaqI GGGAC 1 cut(s) 413
FatI CATG 4 cut(s) 237, 246, 330, 607
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 192, 560
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 192, 560
GlaI GCGC 3 cut(s) 520, 522, 548
GluI GCNGC 2 cut(s) 192, 560
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 195
HhaI GCGC 3 cut(s) 521, 523, 549
Hin1II CATG 4 cut(s) 241, 250, 334, 611
Hin6I GCGC 3 cut(s) 519, 521, 547
HinP1I GCGC 3 cut(s) 519, 521, 547
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 183, 310
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 59, 100, 345
Hpy188I TCNGA 2 cut(s) 461, 629
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 59, 100, 345
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 204, 555, 568
HpyCH4IV ACGT 5 cut(s) 55, 61, 405, 414, 489
HpyCH4V TGCA 2 cut(s) 107, 494
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 40, 261, 270, 284, 391, 529
HpyF3I CTNAG 2 cut(s) 251, 358
HpySE526I ACGT 5 cut(s) 55, 61, 405, 414, 489
Hsp92II CATG 4 cut(s) 241, 250, 334, 611
HspAI GCGC 3 cut(s) 519, 521, 547
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 2 cut(s) 611, 615
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 9 cut(s) 57, 188, 201, 208, 303, 423, 455, 458, 605
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 532
MaeII ACGT 5 cut(s) 55, 61, 405, 414, 489
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 613, 617
MboI GATC 2 cut(s) 611, 615
MboII GAAGA 4 cut(s) 73, 198, 371, 552
MfeI CAATTG 1 cut(s) 597
MluCI AATT 2 cut(s) 295, 597
MluI ACGCGT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 2 cut(s) 133, 173
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 191, 562
MspI CCGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 597
MvnI CGCG 4 cut(s) 51, 519, 521, 547
MwoI GCNNNNNNNGC 7 cut(s) 31, 40, 261, 270, 284, 391, 529
NcoI CCATGG 1 cut(s) 607
NdeII GATC 2 cut(s) 611, 615
NlaIII CATG 4 cut(s) 241, 250, 334, 611
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 1 cut(s) 415
PauI GCGCGC 1 cut(s) 519
PcsI WCGNNNNNNNCGW 2 cut(s) 411, 551
PfeI GAWTC 1 cut(s) 183
Pfl23II CGTACG 2 cut(s) 52, 411
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 2 cut(s) 193, 561
PleI GAGTC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 406
PmlI CACGTG 1 cut(s) 406
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 3 cut(s) 56, 406, 415
PspCI CACGTG 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 187
PspLI CGTACG 2 cut(s) 52, 411
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 400
PteI GCGCGC 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 54, 413, 511
RsaNI GTAC 3 cut(s) 53, 412, 510
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 2 cut(s) 192, 560
Sau3AI GATC 2 cut(s) 611, 615
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 304
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 2 cut(s) 295, 597
SsiI CCGC 3 cut(s) 13, 41, 560
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 3 cut(s) 204, 555, 568
TaiI ACGT 5 cut(s) 58, 64, 408, 417, 492
TaqI TCGA 1 cut(s) 614
TasI AATT 2 cut(s) 295, 597
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 366, 449
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 136, 226, 353
TspRI CASTG 2 cut(s) 366, 449
Van91I CCANNNNNTGG 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.