RLG00000002130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000574
Physical Location & Seq
Reverse (-)
25958331 .. 25958845
515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002130

Sequence Viewer

Length: 399 bp
ATGGCTGAACTTCAGCATGAAATGCGCCAAACCCTAATCTTACACGAATATAATTCCTTTACTGTAACCTTCAACATCTTTCTAATCAATCTCTCAGCTTCCACTTCCAGTCATGCCATTCTTGCTTTCATCGTCCCCATACTCGTCGCCTTTATTCAAATCAAGTTCCCAGGAATTTCAGTACTGTCTTCTCCATTCGAAACACGTCGTAATACCACAGTTGTCGCGATTGCAAGCTTACTAGCATATTGCTTGATTGTTGGGGTTAAGGTAAGGTTTCCTGCTAGGGCTCGTACATGGGGAGGGTGTCCAATTAGTCCGAATGCTTCGTCAACAAGCGCGCCGACGTCAACTGAGATCGAGGCGCACACTGCTCCCTTAGAGGGTAGAGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.3

Weight (kDa)

8.8

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 350
AccII CGCG 2 cut(s) 227, 341
AcsI RAATTY 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 2 cut(s) 183, 295
AfiI CCNNNNNNNGG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 73, 158
AjiI CACGTC 1 cut(s) 206
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 98, 237, 392, 396
AluI AGCT 4 cut(s) 98, 237, 392, 396
ApoI RAATTY 1 cut(s) 174
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AspLEI GCGC 4 cut(s) 27, 341, 343, 367
AsuII TTCGAA 1 cut(s) 198
AsuNHI GCTAGC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 171
BfaI CTAG 3 cut(s) 242, 285, 393
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 171
BmtI GCTAGC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 108, 345
BseNI ACTGG 1 cut(s) 108
BsePI GCGCGC 1 cut(s) 339
Bsh1236I CGCG 2 cut(s) 227, 341
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 357
Bsp68I TCGCGA 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 107, 346
BspFNI CGCG 2 cut(s) 227, 341
BspOI GCTAGC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 169
BssHII GCGCGC 1 cut(s) 339
BssMI GATC 1 cut(s) 357
BssNI GRCGYC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 3 cut(s) 64, 186, 220
BstACI GRCGYC 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 235, 341, 394
BstDEI CTNAG 3 cut(s) 94, 354, 379
BstFNI CGCG 2 cut(s) 227, 341
BstHHI GCGC 4 cut(s) 27, 341, 343, 367
BstKTI GATC 1 cut(s) 360
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 3 cut(s) 22, 122, 371
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 2 cut(s) 227, 341
BstV2I GAAGAC 1 cut(s) 180
BtrI CACGTC 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
BtuMI TCGCGA 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 235, 341, 394
CfoI GCGC 4 cut(s) 27, 341, 343, 367
Csp6I GTAC 2 cut(s) 182, 294
CviAII CATG 3 cut(s) 17, 113, 297
CviJI RGCY 6 cut(s) 5, 98, 237, 290, 392, 396
CviKI_1 RGCY 6 cut(s) 5, 98, 237, 290, 392, 396
CviQI GTAC 2 cut(s) 182, 294
DdeI CTNAG 3 cut(s) 94, 354, 379
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 3 cut(s) 20, 116, 300
FaiI YATR 6 cut(s) 18, 51, 114, 140, 247, 298
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 16, 112, 296
FriOI GRGCYC 1 cut(s) 292
FspBI CTAG 3 cut(s) 242, 285, 393
GlaI GCGC 4 cut(s) 26, 340, 342, 366
HhaI GCGC 4 cut(s) 27, 341, 343, 367
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 3 cut(s) 20, 116, 300
Hin6I GCGC 4 cut(s) 25, 339, 341, 365
HinP1I GCGC 4 cut(s) 25, 339, 341, 365
HincII GTYRAC 2 cut(s) 333, 351
HindII GTYRAC 2 cut(s) 333, 351
HindIII AAGCTT 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 333, 351
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 333, 351
Hpy99I CGWCG 3 cut(s) 149, 210, 349
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 3 cut(s) 64, 186, 220
HpyCH4IV ACGT 2 cut(s) 205, 347
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 122, 371
HpyF3I CTNAG 3 cut(s) 94, 354, 379
HpySE526I ACGT 2 cut(s) 205, 347
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 3 cut(s) 20, 116, 300
HspAI GCGC 4 cut(s) 25, 339, 341, 365
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 4 cut(s) 121, 156, 183, 294
MaeI CTAG 3 cut(s) 242, 285, 393
MaeII ACGT 2 cut(s) 205, 347
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 3 cut(s) 52, 174, 312
MnlI CCTC 3 cut(s) 296, 355, 376
MseI TTAA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 227, 341
MwoI GCNNNNNNNGC 3 cut(s) 22, 122, 371
NdeII GATC 1 cut(s) 357
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 3 cut(s) 20, 116, 300
NruI TCGCGA 1 cut(s) 227
NspV TTCGAA 1 cut(s) 198
PauI GCGCGC 1 cut(s) 339
PctI GAATGC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PteI GCGCGC 1 cut(s) 339
RruI TCGCGA 1 cut(s) 227
RsaI GTAC 2 cut(s) 183, 295
RsaNI GTAC 2 cut(s) 182, 294
SaqAI TTAA 1 cut(s) 267
Sau3AI GATC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 292
SetI ASST 9 cut(s) 71, 100, 208, 239, 273, 278, 350, 394, 398
SfuI TTCGAA 1 cut(s) 198
Sse9I AATT 3 cut(s) 52, 174, 312
SspMI CTAG 3 cut(s) 242, 285, 393
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 64, 186, 220
TaiI ACGT 2 cut(s) 208, 350
TaqI TCGA 2 cut(s) 198, 360
TasI AATT 3 cut(s) 52, 174, 312
TatI WGTACW 1 cut(s) 181
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 33, 118
TspRI CASTG 1 cut(s) 376
XapI RAATTY 1 cut(s) 174
XspI CTAG 3 cut(s) 242, 285, 393
ZraI GACGTC 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.