RLG00000014966

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000574
Physical Location & Seq
Forward (+)
60076705 .. 60077343
639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014966

Sequence Viewer

Length: 639 bp
ATGGCTGATTTCCGCCATCAATGGCCATCCTTTGTCTTACAGCCTGAACGTGTAAGTGAACGTGATAATATCTTTGTCATCTTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAACCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTGTCCAGATCAGATTCCCAGCTGCTGGAATATTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCAAAACTTATTCCCAACTCACCCTGAAAAACTTCGCATGGCTATGAAGTTAACAGCTTCGCTCTCCGTGGCTTCACTTGTTTCTCTTCTGCTTCCCAAGCCGTGGGACCACGTGCCGTGCGTGACCTACTTCTTGTATTTTACAGGCCTGTGTCTTGGGTTAGTCAGAACTATATTTCTGGCTTATTACCACCACGTTGCAAGTGGATTTGTGCGTACCTTACGCGCGCATCAACAGCAGCTGAGAAGAACGCGCCCACCGTTGCCGCTGACAGTCAGTCTGCCCAATATGTCCAACCAGCCAGTTGCAAACCATGGATCGATCACAAAAGTCAGAACCCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.04

Weight (kDa)

10.12

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 194, 393
AccI GTMKAC 1 cut(s) 99
AccII CGCG 3 cut(s) 516, 518, 544
AciI CCGC 2 cut(s) 13, 557
AclWI GGATC 1 cut(s) 616
AcoI YGGCCR 1 cut(s) 23
AcvI CACGTG 1 cut(s) 403
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 194, 393
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 85, 218
AhdI GACNNNNNGTC 1 cut(s) 567
AluBI AGCT 5 cut(s) 191, 255, 287, 347, 532
AluI AGCT 5 cut(s) 191, 255, 287, 347, 532
AlwI GGATC 1 cut(s) 616
AlwNI CAGNNNCTG 2 cut(s) 194, 532
AoxI GGCC 2 cut(s) 23, 436
ApeKI GCWGC 2 cut(s) 191, 529
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 3 cut(s) 518, 520, 546
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 157, 302
AvaII GGWCC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 178, 541
BccI CCATC 2 cut(s) 24, 34
BceAI ACGGC 2 cut(s) 376, 391
BfaI CTAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 192, 530, 557
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 3 cut(s) 193, 531, 558
Bme18I GGWCC 1 cut(s) 397
BmeRI GACNNNNNGTC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 611
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 3 cut(s) 357, 392, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 393
Bse1I ACTGG 1 cut(s) 593
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 3 cut(s) 357, 392, 604
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 194, 393
BseMII CTCAG 2 cut(s) 265, 524
BseNI ACTGG 1 cut(s) 593
BsePI GCGCGC 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 178, 541
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 3 cut(s) 516, 518, 544
BshFI GGCC 2 cut(s) 25, 438
BshVI ATCGAT 1 cut(s) 611
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 194, 393
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 2 cut(s) 25, 438
Bsp143I GATC 3 cut(s) 177, 608, 612
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 2 cut(s) 13, 557
BspANI GGCC 2 cut(s) 25, 438
BspCNI CTCAG 2 cut(s) 264, 525
BspDI ATCGAT 1 cut(s) 611
BspFNI CGCG 3 cut(s) 516, 518, 544
BspLI GGNNCC 1 cut(s) 398
BspPI GGATC 1 cut(s) 616
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 3 cut(s) 357, 392, 604
BssHII GCGCGC 1 cut(s) 516
BssMI GATC 3 cut(s) 177, 608, 612
BssT1I CCWWGG 1 cut(s) 604
Bst4CI ACNGT 2 cut(s) 552, 565
Bst6I CTCTTC 1 cut(s) 381
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 251, 533
BstDSI CCRYGG 3 cut(s) 357, 392, 604
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 3 cut(s) 516, 518, 544
BstHHI GCGC 3 cut(s) 518, 520, 546
BstKTI GATC 3 cut(s) 180, 611, 615
BstMBI GATC 3 cut(s) 177, 608, 612
BstMWI GCNNNNNNNGC 5 cut(s) 261, 270, 284, 388, 526
BstUI CGCG 3 cut(s) 516, 518, 544
BstV1I GCAGC 2 cut(s) 178, 541
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 611
BsuRI GGCC 2 cut(s) 25, 438
BsuTUI ATCGAT 1 cut(s) 611
BtgI CCRYGG 3 cut(s) 357, 392, 604
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 2 cut(s) 194, 532
CfoI GCGC 3 cut(s) 518, 520, 546
Cfr13I GGNCC 1 cut(s) 397
ClaI ATCGAT 1 cut(s) 611
Csp6I GTAC 1 cut(s) 507
CviAII CATG 4 cut(s) 238, 247, 328, 605
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 2 cut(s) 251, 533
DpnI GATC 3 cut(s) 179, 610, 614
DpnII GATC 3 cut(s) 177, 608, 612
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 381
Eam1105I GACNNNNNGTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 604
Eco147I AGGCCT 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 4 cut(s) 241, 250, 331, 608
FaiI YATR 8 cut(s) 228, 239, 248, 329, 335, 464, 581, 606
FaqI GGGAC 1 cut(s) 410
FatI CATG 4 cut(s) 237, 246, 327, 604
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 192, 530, 557
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 192, 530, 557
FspBI CTAG 1 cut(s) 95
GlaI GCGC 3 cut(s) 517, 519, 545
GluI GCNGC 3 cut(s) 192, 530, 557
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 2 cut(s) 25, 438
HhaI GCGC 3 cut(s) 518, 520, 546
Hin1II CATG 4 cut(s) 241, 250, 331, 608
Hin6I GCGC 3 cut(s) 516, 518, 544
HinP1I GCGC 3 cut(s) 516, 518, 544
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 1 cut(s) 183
HpaI GTTAAC 1 cut(s) 342
HphI GGTGA 2 cut(s) 157, 302
Hpy166II GTNNAC 3 cut(s) 59, 100, 342
Hpy188I TCNGA 3 cut(s) 182, 458, 626
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 59, 100, 342
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 552, 565
HpyCH4IV ACGT 4 cut(s) 49, 61, 402, 486
HpyCH4V TGCA 3 cut(s) 107, 491, 599
HpyF10VI GCNNNNNNNGC 5 cut(s) 261, 270, 284, 388, 526
HpyF3I CTNAG 2 cut(s) 251, 533
HpySE526I ACGT 4 cut(s) 49, 61, 402, 486
Hsp92II CATG 4 cut(s) 241, 250, 331, 608
HspAI GCGC 3 cut(s) 516, 518, 544
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 177, 608, 612
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 2 cut(s) 178, 541
LweI GCATC 1 cut(s) 529
MaeI CTAG 1 cut(s) 95
MaeII ACGT 4 cut(s) 49, 61, 402, 486
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 179, 610, 614
MboI GATC 3 cut(s) 177, 608, 612
MboII GAAGA 4 cut(s) 73, 198, 368, 549
MlsI TGGCCA 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 2 cut(s) 133, 173
Mox20I TGGCCA 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 3 cut(s) 191, 532, 559
MvnI CGCG 3 cut(s) 516, 518, 544
MwoI GCNNNNNNNGC 5 cut(s) 261, 270, 284, 388, 526
NcoI CCATGG 1 cut(s) 604
NdeII GATC 3 cut(s) 177, 608, 612
NlaIII CATG 4 cut(s) 241, 250, 331, 608
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 412
PauI GCGCGC 1 cut(s) 516
PceI AGGCCT 1 cut(s) 438
PcsI WCGNNNNNNNCGW 2 cut(s) 408, 548
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 2 cut(s) 194, 393
PkrI GCNGC 3 cut(s) 193, 531, 558
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 403
PspCI CACGTG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 397
PstNI CAGNNNCTG 2 cut(s) 194, 532
PteI GCGCGC 1 cut(s) 516
PvuII CAGCTG 2 cut(s) 191, 532
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 3 cut(s) 192, 530, 557
Sau3AI GATC 3 cut(s) 177, 608, 612
Sau96I GGNCC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 529
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 332
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 2 cut(s) 13, 557
SspI AATATT 1 cut(s) 201
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 438
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 2 cut(s) 552, 565
TaiI ACGT 4 cut(s) 52, 64, 405, 489
TaqI TCGA 1 cut(s) 611
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 191, 529
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 136, 226, 350
TspGWI ACGGA 1 cut(s) 346
Van91I CCANNNNNTGG 2 cut(s) 194, 393
VpaK11BI GGWCC 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.