FvH4_7g11471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000574
Physical Location & Seq
Forward (+)
10615260 .. 10616261
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11471.t1

Sequence Viewer

Length: 657 bp
ATGCCATGGTTTTTCCTTACTTCGACAGGAACAGTGCTTTTATCCATGGCTAGCCATCAGTTCTTTTGTGCTGGGATGATCAACGATTCTCATTTCGATCATGTTGACATGTACTTGATCAATAACTACATCATGTTCAGGAACAGTGCTGTGCAAAACCATCATGAAGGTGAGGTTGTTGGGTTCGCAATTCCCATACTGCTAACCTTGGTTCAGATCAGATATCCAGCAGAGGATTTGTTCCGAACACGCCCGATAGCCATCACGCTTGTCCTGACTAGCTTGCTTTGCTATTGCCTGGTCCTCGCCTTCGGAATACGAATCAGGCAAAGACGTGGCCATGCTCATGCTCGTCGTAGTTTTTGGTATCGGACCGCCTTGACGGTGTTTGGCTCAGTTTCAGTAGCTTCACTCCTTGCACTTCTGTTCCCACACTACAATTCCACTTCACTACTGCATCCTCTGTTCTTCGTTTTCTTCGTCTTCGTGTTGCTGGGGAGCTTGGTGCGGAAGTTGTACAGGCACAATCTGGTCGTGATCAGAAGGGCACGTCCTCTTTTACCTCTGTCCTTCATGGATTTCGATATGCCACGACCTAGAGGGATAGTCAGTAGCGAGGTCAACTATACTATCCGAATGAATGAGAACGACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.2

Weight (kDa)

9.93

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 375, 508
AcoI YGGCCR 1 cut(s) 337
AfaI GTAC 2 cut(s) 113, 518
AflIII ACRYGT 1 cut(s) 108
AjiI CACGTC 2 cut(s) 335, 551
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 282, 407, 501
AluI AGCT 3 cut(s) 282, 407, 501
AoxI GGCC 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 301, 372
AsuHPI GGTGA 1 cut(s) 182
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 2 cut(s) 301, 372
BaeGI GKGCMC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 475
BccI CCATC 3 cut(s) 63, 168, 269
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 3 cut(s) 78, 117, 537
BfaI CTAG 3 cut(s) 51, 279, 597
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 2 cut(s) 301, 372
BmgBI CACGTC 2 cut(s) 335, 551
BmgT120I GGNCC 2 cut(s) 301, 372
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 5, 45, 207
Bse8I GATNNNNATC 1 cut(s) 260
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 3 cut(s) 5, 45, 207
BseGI GGATG 2 cut(s) 81, 457
BseJI GATNNNNATC 1 cut(s) 260
BseMII CTCAG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 550
BseYI CCCAGC 2 cut(s) 71, 493
BshFI GGCC 1 cut(s) 339
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 5 cut(s) 78, 97, 117, 216, 537
Bsp19I CCATGG 2 cut(s) 5, 45
BspACI CCGC 2 cut(s) 375, 508
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 407
BspHI TCATGA 1 cut(s) 163
BspOI GCTAGC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 5, 45, 207
BssMI GATC 5 cut(s) 78, 97, 117, 216, 537
BssT1I CCWWGG 3 cut(s) 5, 45, 207
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 3 cut(s) 34, 146, 385
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 52, 284
BstDEI CTNAG 1 cut(s) 394
BstDSI CCRYGG 2 cut(s) 5, 45
BstF5I GGATG 2 cut(s) 81, 457
BstKTI GATC 5 cut(s) 81, 100, 120, 219, 540
BstMBI GATC 5 cut(s) 78, 97, 117, 216, 537
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 5, 45
BtrI CACGTC 2 cut(s) 335, 551
BtsCI GGATG 2 cut(s) 81, 457
BtsIMutI CAGTG 2 cut(s) 39, 151
Cac8I GCNNGC 2 cut(s) 52, 284
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 301, 372
CpoI CGGWCCG 1 cut(s) 372
Csp6I GTAC 2 cut(s) 112, 517
CspI CGGWCCG 1 cut(s) 372
CviAII CATG 9 cut(s) 6, 46, 101, 109, 133, 164, 341, 347, 574
CviJI RGCY 8 cut(s) 50, 54, 260, 282, 339, 393, 407, 501
CviKI_1 RGCY 8 cut(s) 50, 54, 260, 282, 339, 393, 407, 501
CviQI GTAC 2 cut(s) 112, 517
DdeI CTNAG 1 cut(s) 394
DpnI GATC 5 cut(s) 80, 99, 119, 218, 539
DpnII GATC 5 cut(s) 78, 97, 117, 216, 537
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 3 cut(s) 5, 45, 207
Eco32I GATATC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 301, 372
EcoRII CCWGG 1 cut(s) 297
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 3 cut(s) 5, 45, 207
ErhI CCWWGG 3 cut(s) 5, 45, 207
FaeI CATG 9 cut(s) 9, 49, 104, 112, 136, 167, 344, 350, 577
FatI CATG 9 cut(s) 5, 45, 100, 108, 132, 163, 340, 346, 573
FbaI TGATCA 3 cut(s) 78, 117, 537
FokI GGATG 2 cut(s) 88, 444
FspBI CTAG 3 cut(s) 51, 279, 597
GsaI CCCAGC 2 cut(s) 75, 497
HaeIII GGCC 1 cut(s) 339
Hin1II CATG 9 cut(s) 9, 49, 104, 112, 136, 167, 344, 350, 577
HincII GTYRAC 2 cut(s) 106, 622
HindII GTYRAC 2 cut(s) 106, 622
HinfI GANTC 2 cut(s) 86, 321
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 106, 622
Hpy188I TCNGA 7 cut(s) 216, 221, 245, 314, 372, 542, 635
Hpy188III TCNNGA 4 cut(s) 139, 164, 274, 535
Hpy8I GTNNAC 2 cut(s) 106, 622
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 4 cut(s) 161, 319, 537, 580
HpyCH4III ACNGT 3 cut(s) 34, 146, 385
HpyCH4IV ACGT 2 cut(s) 334, 550
HpyCH4V TGCA 3 cut(s) 154, 419, 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 394
HpySE526I ACGT 2 cut(s) 334, 550
Hsp92II CATG 9 cut(s) 9, 49, 104, 112, 136, 167, 344, 350, 577
Ksp22I TGATCA 3 cut(s) 78, 117, 537
Kzo9I GATC 5 cut(s) 78, 97, 117, 216, 537
LmnI GCTCC 1 cut(s) 498
LweI GCATC 1 cut(s) 466
MaeI CTAG 3 cut(s) 51, 279, 597
MaeII ACGT 2 cut(s) 334, 550
MalI GATC 5 cut(s) 80, 99, 119, 218, 539
MboI GATC 5 cut(s) 78, 97, 117, 216, 537
MboII GAAGA 3 cut(s) 460, 469, 475
MhlI GDGCHC 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 2 cut(s) 189, 439
MluNI TGGCCA 1 cut(s) 339
MnlI CCTC 8 cut(s) 166, 226, 314, 471, 564, 573, 593, 610
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 168, 345
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 288
NcoI CCATGG 2 cut(s) 5, 45
NdeII GATC 5 cut(s) 78, 97, 117, 216, 537
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 9 cut(s) 9, 49, 104, 112, 136, 167, 344, 350, 577
NspI RCATGY 1 cut(s) 112
PagI TCATGA 1 cut(s) 163
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PfeI GAWTC 2 cut(s) 86, 321
PscI ACATGT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 2 cut(s) 71, 493
PspGI CCWGG 1 cut(s) 297
PspPI GGNCC 2 cut(s) 301, 372
RsaI GTAC 2 cut(s) 113, 518
RsaNI GTAC 2 cut(s) 112, 517
RseI CAYNNNNRTG 2 cut(s) 168, 345
Rsr2I CGGWCCG 1 cut(s) 372
RsrII CGGWCCG 1 cut(s) 372
Sau3AI GATC 5 cut(s) 78, 97, 117, 216, 537
Sau96I GGNCC 2 cut(s) 301, 372
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 550
SfaNI GCATC 1 cut(s) 466
SinI GGWCC 2 cut(s) 301, 372
SmiMI CAYNNNNRTG 2 cut(s) 168, 345
Sse9I AATT 2 cut(s) 189, 439
SsiI CCGC 2 cut(s) 375, 508
SspMI CTAG 3 cut(s) 51, 279, 597
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 3 cut(s) 5, 45, 207
TaaI ACNGT 3 cut(s) 34, 146, 385
TaiI ACGT 2 cut(s) 337, 553
TaqI TCGA 3 cut(s) 23, 96, 582
TasI AATT 2 cut(s) 189, 439
TatI WGTACW 2 cut(s) 111, 516
TfiI GAWTC 2 cut(s) 86, 321
TscAI CASTG 2 cut(s) 39, 151
TspDTI ATGAA 3 cut(s) 180, 562, 653
TspRI CASTG 2 cut(s) 39, 151
VpaK11BI GGWCC 2 cut(s) 301, 372
XceI RCATGY 1 cut(s) 112
XspI CTAG 3 cut(s) 51, 279, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.