Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Forward (+)

13123651 .. 13124274

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG150900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCGATTTTCCGTATCAAGTGCAACCCTCAGTCTCACCACGTGAACGTTATAATATCTTCTTCTTTAACCTTGTTCTAGTAGATTTCGCAAGACAAGTTGTCCCTTCCACCTTCGCCATTTTAACTTTCATAGTGCCAATACTTCTCACCTTCATCCAGATCAAATTCCCGGCTGCCGGAATACTGTCTTCTCCATTTGAAACCCAGCATACAAAGTTCATGGTTGCCATGCTCAGCTTACTCGGGTTCTCTGGCTTCGCCATTGGGGCCACCCAAAACTACTTCCCAACTCACGCCGGAAAACTTCGCATGGCTATGAAGTTCACGGCTTCTATCTCAGTGGCTTCACTGGTTTCTATATTGCTTCCGCAGCCTTGGGACCACGTGCCGTACATGATGTACGTCTTCTATTTGATAGGCCACGGTCTCGGTTTAGTACGAAATATATGTCTGGCTTATTACCAGCACGTTGCCAATGGATTTGTGCATGGCTTACGTGCGCGGCAACAGCGGTTGAGAAGAACGAGCCCACCGTTGCCGGTGACACTCAGTGGGCTTAATATCTCCAACCACCCAATTGCTAACCATGGATCGATTACGATAGTCAGAACCCTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.21

Weight (kDa)

10.43

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccII	CGCG	1 cut(s)	505
AciI	CCGC	4 cut(s)	371, 505, 514, 619
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	1 cut(s)	601
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	2 cut(s)	44, 388
AdeI	CACNNNGTG	2 cut(s)	44, 554
AfaI	GTAC	3 cut(s)	395, 404, 441
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	203
AhdI	GACNNNNNGTC	1 cut(s)	101
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw26I	GTCTC	2 cut(s)	40, 434
AlwI	GGATC	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	3, 270, 421
ApeKI	GCWGC	2 cut(s)	176, 373
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	270, 382
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	30, 142, 556
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	533
BbrPI	CACGTG	2 cut(s)	44, 388
BbsI	GAAGAC	2 cut(s)	183, 400
BbvI	GCAGC	2 cut(s)	163, 385
BceAI	ACGGC	2 cut(s)	345, 376
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	40, 434
BfaI	CTAG	2 cut(s)	80, 622
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	177, 374, 506
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	3 cut(s)	178, 375, 507
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	382
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	270, 382
BmiI	GGNNCC	2 cut(s)	271, 383
BmrFI	CCNGG	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	183, 400
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	596
BsaAI	YACGTR	3 cut(s)	44, 388, 500
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	377, 424, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	596
BseDI	CCNNGG	3 cut(s)	377, 424, 589
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	4 cut(s)	45, 250, 354, 565
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	163, 385
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	3 cut(s)	5, 272, 423
BshVI	ATCGAT	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	4 cut(s)	173, 180, 300, 542
BslFI	GGGAC	2 cut(s)	89, 395
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	40, 434
BsmFI	GGGAC	2 cut(s)	89, 395
BsnI	GGCC	3 cut(s)	5, 272, 423
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	162, 593
Bsp1720I	GCTNAGC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	4 cut(s)	371, 505, 514, 619
BspANI	GGCC	3 cut(s)	5, 272, 423
BspCNI	CTCAG	4 cut(s)	44, 249, 353, 564
BspDI	ATCGAT	1 cut(s)	596
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	271, 383
BspPI	GGATC	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	377, 424, 589
BssMI	GATC	2 cut(s)	162, 593
BssT1I	CCWWGG	2 cut(s)	377, 589
Bst4CI	ACNGT	3 cut(s)	189, 428, 537
BstBAI	YACGTR	3 cut(s)	44, 388, 500
BstDEI	CTNAG	4 cut(s)	31, 236, 340, 551
BstDSI	CCRYGG	2 cut(s)	424, 589
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	2 cut(s)	165, 596
BstMAI	GTCTC	2 cut(s)	40, 434
BstMBI	GATC	2 cut(s)	162, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 373, 511
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	163, 385
BstV2I	GAAGAC	2 cut(s)	183, 400
Bsu15I	ATCGAT	1 cut(s)	596
BsuRI	GGCC	3 cut(s)	5, 272, 423
BsuTUI	ATCGAT	1 cut(s)	596
BtgI	CCRYGG	2 cut(s)	424, 589
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	348, 350, 559
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	270, 382
ClaI	ATCGAT	1 cut(s)	596
Csp6I	GTAC	3 cut(s)	394, 403, 440
CviAII	CATG	6 cut(s)	223, 232, 313, 397, 491, 590
CviQI	GTAC	3 cut(s)	394, 403, 440
DdeI	CTNAG	4 cut(s)	31, 236, 340, 551
DpnI	GATC	2 cut(s)	164, 595
DpnII	GATC	2 cut(s)	162, 593
DraIII	CACNNNGTG	2 cut(s)	44, 554
DriI	GACNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	377, 589
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	382
Eco72I	CACGTG	2 cut(s)	44, 388
Eco88I	CYCGRG	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	377, 589
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	2 cut(s)	377, 589
FaeI	CATG	6 cut(s)	226, 235, 316, 400, 494, 593
FaqI	GGGAC	2 cut(s)	89, 395
FatI	CATG	6 cut(s)	222, 231, 312, 396, 490, 589
Fnu4HI	GCNGC	3 cut(s)	177, 374, 506
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	177, 374, 506
FspBI	CTAG	2 cut(s)	80, 622
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	3 cut(s)	177, 374, 506
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	5, 272, 423
HapII	CCGG	4 cut(s)	173, 180, 300, 542
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	6 cut(s)	226, 235, 316, 400, 494, 593
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HpaII	CCGG	4 cut(s)	173, 180, 300, 542
HphI	GGTGA	3 cut(s)	30, 142, 556
Hpy166II	GTNNAC	2 cut(s)	47, 327
Hpy188I	TCNGA	1 cut(s)	611
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	2 cut(s)	47, 327
HpyAV	CCTTC	3 cut(s)	117, 124, 163
HpyCH4III	ACNGT	3 cut(s)	189, 428, 537
HpyCH4IV	ACGT	6 cut(s)	43, 49, 387, 405, 471, 499
HpyCH4V	TGCA	2 cut(s)	25, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 373, 511
HpyF3I	CTNAG	4 cut(s)	31, 236, 340, 551
HpySE526I	ACGT	6 cut(s)	43, 49, 387, 405, 471, 499
Hsp92II	CATG	6 cut(s)	226, 235, 316, 400, 494, 593
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	2 cut(s)	162, 593
Lsp1109I	GCAGC	2 cut(s)	163, 385
MaeI	CTAG	2 cut(s)	80, 622
MaeII	ACGT	6 cut(s)	43, 49, 387, 405, 471, 499
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	2 cut(s)	164, 595
MboI	GATC	2 cut(s)	162, 593
MboII	GAAGA	5 cut(s)	52, 55, 183, 400, 534
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	2 cut(s)	167, 579
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	3 cut(s)	69, 125, 561
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	4 cut(s)	173, 180, 300, 542
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	579
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	3 cut(s)	269, 373, 511
NciI	CCSGG	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	2 cut(s)	162, 593
NlaIII	CATG	6 cut(s)	226, 235, 316, 400, 494, 593
NlaIV	GGNNCC	2 cut(s)	271, 383
NmuCI	GTSAC	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	178, 375, 507
PmaCI	CACGTG	2 cut(s)	44, 388
PmlI	CACGTG	2 cut(s)	44, 388
Ppu21I	YACGTR	3 cut(s)	44, 388, 500
PsiI	TTATAA	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	49
PspCI	CACGTG	2 cut(s)	44, 388
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	271, 383
PspPI	GGNCC	2 cut(s)	270, 382
RsaI	GTAC	3 cut(s)	395, 404, 441
RsaNI	GTAC	3 cut(s)	394, 403, 440
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	69, 125, 561
SatI	GCNGC	3 cut(s)	177, 374, 506
Sau3AI	GATC	2 cut(s)	162, 593
Sau96I	GGNCC	2 cut(s)	270, 382
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	533
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	167, 579
SsiI	CCGC	4 cut(s)	371, 505, 514, 619
SspMI	CTAG	2 cut(s)	80, 622
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	377, 589
TaaI	ACNGT	3 cut(s)	189, 428, 537
TaiI	ACGT	6 cut(s)	46, 52, 390, 408, 474, 502
TaqI	TCGA	1 cut(s)	596
TasI	AATT	2 cut(s)	167, 579
TauI	GCSGC	1 cut(s)	508
Tru1I	TTAA	3 cut(s)	69, 125, 561
Tru9I	TTAA	3 cut(s)	69, 125, 561
TscAI	CASTG	3 cut(s)	348, 357, 559
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	2 cut(s)	176, 373
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	4 cut(s)	121, 145, 211, 335
TspRI	CASTG	3 cut(s)	348, 357, 559
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	2 cut(s)	80, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.