RLG00000035987

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000574
Physical Location & Seq
Forward (+)
74537371 .. 74537952
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035987

Sequence Viewer

Length: 582 bp
ATGTCTCTCTCCCATTCTAGGAGACACACATTAACCTTTAGGGAAGCTAGTCCCGAGCCATCATTCAACATTCTGGTCATCATCAATCAACAACGGCCTGCTGCCGCTCCGCCTCCTCCTCCTCCTCCCACTTCAACTTCCACTCATGCCATTTTTGTTTTTATCGTCACCGTGTTCGTCTCCTTTGTCCAAATCAGGTTCCCAGAAACACAGTCCTCTTCACCATTTGAAACACATCACACAACCATCATGGTCTTCTTTGCTAGCTTAATTTCTTATTGCTCATCTCTTTGGGCCACGAAAAGATTTCCTAGTTACGCCTATGTTTTTCGTGTTACCATGAGATCTGCTGGTCTACTTGCACTAGCTTCCCTGCTTTCACTTCTTCTTCCTGGCTCCTGTCACCGTGTGCCATACATGTTGTTAGTCTTCTATTTCATTGGGGAGTGTTTTCAGTTGCTCCGAATGCCATGTCAATTGACTTACCGGCAAGCCATTCATGGATCTGTGTCAGGCATTCGTCGCGGTCGGACGGGTGCATTATTGCCGCTGACATTCATGGATTTGCCTCCGATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.65

Weight (kDa)

10.14

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 355
AccII CGCG 1 cut(s) 525
AciI CCGC 4 cut(s) 105, 110, 525, 548
AclWI GGATC 1 cut(s) 511
AdeI CACNNNGTG 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 3 cut(s) 67, 135, 230
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 3 cut(s) 47, 267, 368
AluI AGCT 3 cut(s) 47, 267, 368
Alw26I GTCTC 3 cut(s) 9, 16, 184
AlwI GGATC 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 2 cut(s) 95, 294
ApeKI GCWGC 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 3 cut(s) 160, 213, 395
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 53
BbsI GAAGAC 2 cut(s) 247, 421
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 67, 254
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 3 cut(s) 9, 16, 184
BfaI CTAG 5 cut(s) 18, 48, 264, 312, 365
BglII AGATCT 1 cut(s) 344
BisI GCNGC 3 cut(s) 102, 105, 548
BlsI GCNGC 3 cut(s) 103, 106, 549
Bme1390I CCNGG 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 200, 397
BmrFI CCNGG 1 cut(s) 393
BmtI GCTAGC 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 247, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 486
BseBI CCWGG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 18
BseRI GAGGAG 4 cut(s) 105, 108, 111, 114
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 525
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 2 cut(s) 97, 296
BsiEI CGRYCG 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 9, 16, 184
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 2 cut(s) 471, 516
BsnI GGCC 2 cut(s) 97, 296
BsoBI CYCGRG 1 cut(s) 53
Bsp143I GATC 2 cut(s) 344, 503
BspACI CCGC 4 cut(s) 105, 110, 525, 548
BspANI GGCC 2 cut(s) 97, 296
BspFNI CGCG 1 cut(s) 525
BspLI GGNNCC 2 cut(s) 200, 397
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssMI GATC 2 cut(s) 344, 503
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 3 cut(s) 172, 213, 407
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 99, 265, 492
BstFNI CGCG 1 cut(s) 525
BstKTI GATC 2 cut(s) 347, 506
BstMAI GTCTC 3 cut(s) 9, 16, 184
BstMBI GATC 2 cut(s) 344, 503
BstMCI CGRYCG 1 cut(s) 529
BstMWI GCNNNNNNNGC 2 cut(s) 466, 522
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 391
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 247, 421
BstX2I RGATCY 2 cut(s) 344, 503
BstYI RGATCY 2 cut(s) 344, 503
BsuRI GGCC 2 cut(s) 97, 296
Cac8I GCNNGC 3 cut(s) 99, 265, 492
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 294
CviAII CATG 7 cut(s) 146, 250, 340, 418, 471, 500, 559
CviJI RGCY 8 cut(s) 47, 58, 97, 267, 296, 368, 396, 494
CviKI_1 RGCY 8 cut(s) 47, 58, 97, 267, 296, 368, 396, 494
DpnI GATC 2 cut(s) 346, 505
DpnII GATC 2 cut(s) 344, 503
DraIII CACNNNGTG 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 7 cut(s) 149, 253, 343, 421, 474, 503, 562
FaiI YATR 9 cut(s) 147, 251, 324, 341, 415, 419, 472, 501, 560
FaqI GGGAC 1 cut(s) 36
FatI CATG 7 cut(s) 145, 249, 339, 417, 470, 499, 558
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 102, 105, 548
Fsp4HI GCNGC 3 cut(s) 102, 105, 548
FspBI CTAG 5 cut(s) 18, 48, 264, 312, 365
GluI GCNGC 3 cut(s) 102, 105, 548
HaeIII GGCC 2 cut(s) 97, 296
HapII CCGG 1 cut(s) 487
Hin1II CATG 7 cut(s) 149, 253, 343, 421, 474, 503, 562
HpaII CCGG 1 cut(s) 487
HphI GGTGA 3 cut(s) 160, 213, 395
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 464, 531, 573
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 1 cut(s) 525
HpyCH4III ACNGT 3 cut(s) 172, 213, 407
HpyCH4V TGCA 2 cut(s) 362, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 466, 522
Hsp92II CATG 7 cut(s) 149, 253, 343, 421, 474, 503, 562
Kzo9I GATC 2 cut(s) 344, 503
LmnI GCTCC 3 cut(s) 112, 401, 465
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 5 cut(s) 18, 48, 264, 312, 365
MaeIII GTNAC 4 cut(s) 166, 314, 334, 401
MalI GATC 2 cut(s) 346, 505
MbiI CCGCTC 1 cut(s) 107
MboI GATC 2 cut(s) 344, 503
MboII GAAGA 5 cut(s) 210, 247, 377, 380, 421
MfeI CAATTG 1 cut(s) 476
MflI RGATCY 2 cut(s) 344, 503
MluCI AATT 3 cut(s) 270, 476, 577
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 7 cut(s) 123, 126, 129, 132, 135, 226, 579
MseI TTAA 2 cut(s) 32, 269
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 476
Mva1269I GAATGC 2 cut(s) 471, 516
MvaI CCWGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 466, 522
NdeII GATC 2 cut(s) 344, 503
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 7 cut(s) 149, 253, 343, 421, 474, 503, 562
NlaIV GGNNCC 2 cut(s) 200, 397
NmuCI GTSAC 2 cut(s) 166, 401
NspI RCATGY 1 cut(s) 421
PciI ACATGT 1 cut(s) 417
PctI GAATGC 2 cut(s) 471, 516
PkrI GCNGC 3 cut(s) 103, 106, 549
PscI ACATGT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 200, 397
PspPI GGNCC 1 cut(s) 294
PsuI RGATCY 2 cut(s) 344, 503
SaqAI TTAA 2 cut(s) 32, 269
SatI GCNGC 3 cut(s) 102, 105, 548
Sau3AI GATC 2 cut(s) 344, 503
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 393
SetI ASST 5 cut(s) 38, 49, 200, 269, 370
Sse9I AATT 3 cut(s) 270, 476, 577
SsiI CCGC 4 cut(s) 105, 110, 525, 548
SspMI CTAG 5 cut(s) 18, 48, 264, 312, 365
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 3 cut(s) 172, 213, 407
TasI AATT 3 cut(s) 270, 476, 577
TauI GCSGC 2 cut(s) 107, 550
Tru1I TTAA 2 cut(s) 32, 269
Tru9I TTAA 2 cut(s) 32, 269
TseFI GTSAC 2 cut(s) 166, 401
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 166, 401
TspDTI ATGAA 3 cut(s) 427, 488, 547
XceI RCATGY 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 355
XspI CTAG 5 cut(s) 18, 48, 264, 312, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.